Sample 3300000732

3300000732: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2

Overview

Basic Information
IMG/M Taxon OID	3300000732 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0071004 \| Gp0054785 \| Ga0002414
Sample Name	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	40831740
Sequencing Scaffolds	61
Novel Protein Genes	65
Associated Families	62

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7
All Organisms → Viruses → Predicted Viral	1
Not Available	19
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 195	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Multiple Locations In Canada And Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → solid layer → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	El Dorado National Forest, Georgetown, California, USA
Coordinates	Lat. (^o)	38.88	Long. (^o)	-120.64	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000262	Metagenome / Metatranscriptome	1428	Y
F001281	Metagenome / Metatranscriptome	732	Y
F001868	Metagenome / Metatranscriptome	624	Y
F002350	Metagenome / Metatranscriptome	568	Y
F003104	Metagenome / Metatranscriptome	507	Y
F003794	Metagenome / Metatranscriptome	468	Y
F004310	Metagenome / Metatranscriptome	444	Y
F005285	Metagenome / Metatranscriptome	406	Y
F005599	Metagenome / Metatranscriptome	395	Y
F006963	Metagenome / Metatranscriptome	361	Y
F008140	Metagenome / Metatranscriptome	338	Y
F009926	Metagenome / Metatranscriptome	311	Y
F010656	Metagenome / Metatranscriptome	301	Y
F013562	Metagenome / Metatranscriptome	270	Y
F014173	Metagenome / Metatranscriptome	265	Y
F018466	Metagenome / Metatranscriptome	235	N
F020387	Metagenome / Metatranscriptome	224	N
F024969	Metagenome / Metatranscriptome	203	Y
F025123	Metagenome / Metatranscriptome	203	Y
F026312	Metagenome	198	Y
F027285	Metagenome / Metatranscriptome	195	N
F027566	Metagenome / Metatranscriptome	194	Y
F027923	Metagenome / Metatranscriptome	193	Y
F028295	Metagenome / Metatranscriptome	192	Y
F028604	Metagenome / Metatranscriptome	191	Y
F029482	Metagenome / Metatranscriptome	188	N
F029882	Metagenome / Metatranscriptome	187	Y
F031228	Metagenome / Metatranscriptome	183	Y
F036786	Metagenome / Metatranscriptome	169	N
F037137	Metagenome / Metatranscriptome	168	Y
F037615	Metagenome / Metatranscriptome	167	Y
F038265	Metagenome / Metatranscriptome	166	Y
F041458	Metagenome / Metatranscriptome	160	N
F042436	Metagenome / Metatranscriptome	158	N
F044758	Metagenome / Metatranscriptome	154	N
F045203	Metagenome / Metatranscriptome	153	Y
F045814	Metagenome / Metatranscriptome	152	Y
F046730	Metagenome / Metatranscriptome	151	Y
F052030	Metagenome / Metatranscriptome	143	Y
F054174	Metagenome / Metatranscriptome	140	Y
F055459	Metagenome / Metatranscriptome	138	Y
F057343	Metagenome / Metatranscriptome	136	Y
F057531	Metagenome / Metatranscriptome	136	Y
F058290	Metagenome	135	Y
F060961	Metagenome / Metatranscriptome	132	Y
F061050	Metagenome / Metatranscriptome	132	N
F061299	Metagenome / Metatranscriptome	132	N
F064046	Metagenome / Metatranscriptome	129	Y
F065946	Metagenome	127	Y
F067945	Metagenome / Metatranscriptome	125	Y
F069298	Metagenome / Metatranscriptome	124	Y
F069409	Metagenome	124	Y
F069796	Metagenome	123	Y
F075150	Metagenome / Metatranscriptome	119	N
F079254	Metagenome / Metatranscriptome	116	Y
F083042	Metagenome / Metatranscriptome	113	Y
F083953	Metagenome	112	Y
F094490	Metagenome / Metatranscriptome	106	N
F099613	Metagenome	103	N
F099698	Metagenome / Metatranscriptome	103	Y
F101712	Metagenome / Metatranscriptome	102	Y
F105319	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI12023J11887_1000313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2438	Open in IMG/M
JGI12023J11887_1000511	All Organisms → Viruses → Predicted Viral	2043	Open in IMG/M
JGI12023J11887_1000657	Not Available	1871	Open in IMG/M
JGI12023J11887_1000777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1760	Open in IMG/M
JGI12023J11887_1001587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1298	Open in IMG/M
JGI12023J11887_1001755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHD0069	1245	Open in IMG/M
JGI12023J11887_1001979	All Organisms → cellular organisms → Bacteria → Proteobacteria	1174	Open in IMG/M
JGI12023J11887_1002055	Not Available	1157	Open in IMG/M
JGI12023J11887_1002333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1083	Open in IMG/M
JGI12023J11887_1002634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1020	Open in IMG/M
JGI12023J11887_1002743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae	1001	Open in IMG/M
JGI12023J11887_1002910	Not Available	971	Open in IMG/M
JGI12023J11887_1003497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	888	Open in IMG/M
JGI12023J11887_1003740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	857	Open in IMG/M
JGI12023J11887_1003789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	851	Open in IMG/M
JGI12023J11887_1003931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	837	Open in IMG/M
JGI12023J11887_1004036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	827	Open in IMG/M
JGI12023J11887_1004122	Not Available	819	Open in IMG/M
JGI12023J11887_1004404	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793	Open in IMG/M
JGI12023J11887_1004504	Not Available	783	Open in IMG/M
JGI12023J11887_1004894	All Organisms → cellular organisms → Bacteria → Proteobacteria	754	Open in IMG/M
JGI12023J11887_1005234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	732	Open in IMG/M
JGI12023J11887_1005329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	727	Open in IMG/M
JGI12023J11887_1005341	All Organisms → cellular organisms → Bacteria → Proteobacteria	726	Open in IMG/M
JGI12023J11887_1005437	Not Available	720	Open in IMG/M
JGI12023J11887_1005788	Not Available	702	Open in IMG/M
JGI12023J11887_1005870	Not Available	698	Open in IMG/M
JGI12023J11887_1006232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	681	Open in IMG/M
JGI12023J11887_1006382	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
JGI12023J11887_1006452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	672	Open in IMG/M
JGI12023J11887_1006591	Not Available	666	Open in IMG/M
JGI12023J11887_1006911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 195	653	Open in IMG/M
JGI12023J11887_1007086	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
JGI12023J11887_1007763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
JGI12023J11887_1008026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	612	Open in IMG/M
JGI12023J11887_1008048	Not Available	611	Open in IMG/M
JGI12023J11887_1008058	Not Available	611	Open in IMG/M
JGI12023J11887_1008304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
JGI12023J11887_1008366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	602	Open in IMG/M
JGI12023J11887_1008504	Not Available	597	Open in IMG/M
JGI12023J11887_1008883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586	Open in IMG/M
JGI12023J11887_1009125	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
JGI12023J11887_1009138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	580	Open in IMG/M
JGI12023J11887_1009407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	573	Open in IMG/M
JGI12023J11887_1009881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	563	Open in IMG/M
JGI12023J11887_1009971	Not Available	561	Open in IMG/M
JGI12023J11887_1010014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	560	Open in IMG/M
JGI12023J11887_1010158	Not Available	557	Open in IMG/M
JGI12023J11887_1010433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	551	Open in IMG/M
JGI12023J11887_1010709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
JGI12023J11887_1010795	Not Available	543	Open in IMG/M
JGI12023J11887_1010978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	540	Open in IMG/M
JGI12023J11887_1011322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	533	Open in IMG/M
JGI12023J11887_1011324	Not Available	533	Open in IMG/M
JGI12023J11887_1011399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
JGI12023J11887_1011787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	525	Open in IMG/M
JGI12023J11887_1012464	Not Available	514	Open in IMG/M
JGI12023J11887_1012519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	513	Open in IMG/M
JGI12023J11887_1012708	Not Available	510	Open in IMG/M
JGI12023J11887_1012710	Not Available	510	Open in IMG/M
JGI12023J11887_1012828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	508	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI12023J11887_1000313	JGI12023J11887_10003133	F069298	LHDAARFRARSTSHSVAALGGCTNIPLAAVGAQEDETILESGFLGHAKVRFVHLDPPGLFKSWKI*
JGI12023J11887_1000511	JGI12023J11887_10005115	F038265	HCVARTRGDPFGVAETLRGIAAGKHAVTNYRGLPAVSYRQMSDTKT*
JGI12023J11887_1000657	JGI12023J11887_10006571	F005285	MHGVSGDGMARRWSEMNQGSRTGKGTAFMAARGPEELSPGGDRAFVVARKRGNARGAKGGRKVEA*
JGI12023J11887_1000777	JGI12023J11887_10007771	F005599	MPTLLPFGEGRVSGEAIDTRTRSIRRGSGHGTLERWFG*
JGI12023J11887_1001587	JGI12023J11887_10015872	F027923	MKRTRHKRTPSVRRRALEFIAAHPGCTEALLAAENIPADVLVELVQSGLVIARIERLDDEDGAVEVTCAWITXTGERVLAARG*
JGI12023J11887_1001755	JGI12023J11887_10017553	F101712	MDVSSSASSIANSLNTVSTSREIPHEFRYHAKVLNDHLADVLRSGLFDDIDHFFKMLELHVRNRRAR*
JGI12023J11887_1001979	JGI12023J11887_10019792	F075150	LKAATNLNVVQPKLFQASRQDDRHFSDCTVSVIQILDDADGAFRILGAELRTVLSATTMYADKPHRL*
JGI12023J11887_1002055	JGI12023J11887_10020552	F037137	MDELTPDQEKAVAATVGAIQRIAMAIVAFPKEQRATHYALVRRNFEAAIKEFSIEGEMAQTWLDKTMIGIQSLVTEIEVGGGAAGGKA*
JGI12023J11887_1002055	JGI12023J11887_10020553	F061299	MSDNVPDPDVKKRAEFISEVLTTVLEEGGYDSAVAQARRFLANNTPAQMEQMKPHFSSLALEFRILAGFFKD*
JGI12023J11887_1002333	JGI12023J11887_10023333	F083953	MLRRIRLKDAVDAQVASSEFSAFLKGAAATNLSQEQREELFREFLQWQKNQRNGTQR*
JGI12023J11887_1002634	JGI12023J11887_10026341	F014173	MVKHGALSKSHVHQMLASKDARVRRAAYTLLEASNPALRRNSELFLEIIRFIWEANPSYDVYREFNKRHLIVPYKVHELISARLK
JGI12023J11887_1002743	JGI12023J11887_10027431	F069409	GFGNGTFGMAQASAATADNTTASARLVAKAVDRNAAAREDGGTAFLRGESFNRSIPRSI*
JGI12023J11887_1002910	JGI12023J11887_10029103	F041458	MLLRAEDQAKFQGRIDDKGATVWASYRIEGRVEGKPVVQSDKRMFASEQEARTWLLGEAEQRGFNDFEPEVHAGA*
JGI12023J11887_1003497	JGI12023J11887_10034971	F025123	MTKLDNRCAHCGGKFGLVSHHHRGLRFCREACKENFLAKTAKDYARMRKWFGLSCRTRNQEPG*
JGI12023J11887_1003658	JGI12023J11887_10036582	F061050	MPDEVTPDYVRARWAYSELLSWGHGHLYQGPGVQDLKEKLALGVPFDELGKAEHYLLIDQFDRVRGNHFNRYIIGIPNFKPVLWSRDELAAVHVIPYFVRDVSSLEHLKVTFKQWIEADPVR
JGI12023J11887_1003740	JGI12023J11887_10037402	F067945	MNVIGSPANTVILHWNECGTSWAQLPWRDWVRFRGFDDGGLSLLVGAEAGEHYFLVCVLDDRGELANVIPHRYVLSTDGRLVHGFDGLRQAEREEYCRIQLLHLPTIEDSERYNELDARGFAVNL
JGI12023J11887_1003789	JGI12023J11887_10037891	F028295	MSWTAHYFDRRLNSDGVSRAFASKEDALVAACDLMRRNCVVNFVQGPNDEKIDATTITAWCKRRPKRKDGPAAS*
JGI12023J11887_1003931	JGI12023J11887_10039311	F046730	MGLENVFLSVRPIVESLARSTMWSSTTLFSNNRRVQRERPLGGLEQA
JGI12023J11887_1004036	JGI12023J11887_10040363	F054174	MAWTDLISGCFGFGTAPFASNRPDEDIAKEAIAAAQAEGATRADFAQLIALYPRRYIKSDQVLRERIREDAGRLDRLWKVAPSTDGPETSPSS*
JGI12023J11887_1004122	JGI12023J11887_10041222	F006963	MYARHRREVQTVRCAMTFLLFTTLLCALGATQASAQNALSQQLLELDDDERNAAFTLMLRDGHRKCDQVVRTLFKGTILGVDEWEAMCRNRISYSFTVLAKPNETMIMFVSCRELLATSRMLLHRAGSKTKATGCKIK*
JGI12023J11887_1004404	JGI12023J11887_10044041	F000262	MSDKLKRLEQIYLTWMTILVALATVSCSGQDFGFLQPTPEDLCKCMPLEPDIADYRHAAKHVPIPNIVAQEVSVEIILTWSQDVFIPPDAPRTGRELEVFHIANAFLQNASVNALDCDVSMEXSQTADKSSARMIVETPVDSEYCGARQNMQAQLKQHGFRLDSQHGGELPHALPVDVVGMAFEDFEHDRGHVATLWELHPAIVTLH*
JGI12023J11887_1004504	JGI12023J11887_10045042	F010656	MEVLIGFFALRPIFTFWGLKVVWYTYLLNILIQAYIAVSGIFQVLAQRGISWEAWSPNFLPLILTIVVQLALVRLLLEVAAIILSTARHSREQPRAPAL*
JGI12023J11887_1004894	JGI12023J11887_10048941	F018466	MANSLRNAVIGFGLAGTLVVAAVAPSFAQGVYANPYFYTAPQGYAGYSGYAYAPGYGARSWDYPAGYDTSGMPYSYRELGWQPGPYGTRCYPTLRAQNRC*
JGI12023J11887_1005234	JGI12023J11887_10052342	F105319	VDSLNRSLSEDMLGEYIARLESEVGVTINQNTLNQVVSGGAVDSAN*
JGI12023J11887_1005329	JGI12023J11887_10053291	F045203	MNARARSFWREEIALVALLFAFFAGIVCFALPLPFDARLFPLVIGGAGILLTLAIAAVE
JGI12023J11887_1005341	JGI12023J11887_10053411	F009926	GSDGRVHLVETLAAAQKFGIDRADLVEHLAQFAEVGEELADFGVSRIRHVTDARALAGSTDCGKISLGAMPSSVDTVAVGPPAAFVGLDQRAAQYLFDRRQAARKLVATLAKSCR*
JGI12023J11887_1005437	JGI12023J11887_10054372	F027566	MKTRVIKYLGALGLGAALVLTAATSSFAQRHDPNCIPQYDTSGAQTAPYC*
JGI12023J11887_1005788	JGI12023J11887_10057881	F020387	MTYIEQAIKEAVDHGYQPNVERYPEMEGISPLQIAIAMQADVFIDPAFWKALGKKRGWTTDDDFKYWQKSVAEWEDKYWKKFWHRFIDHLAEDKDAESFFKALDSPPRQRPDSHH*
JGI12023J11887_1005788	JGI12023J11887_10057882	F058290	VEHTFESLPRVDKDNKISITLRGEVERTRDALKLIFTKYCLPKSG*
JGI12023J11887_1005870	JGI12023J11887_10058701	F037615	MNTLTTARTIVLVFSLIALAAPSQAAQRTNARDHGPSLEQKCHELVGKEEREGEGRGHIGHLQVQRFSDCMMGMPN*
JGI12023J11887_1006232	JGI12023J11887_10062322	F057343	AVEEFTANLNMKLGNLPVAPPAKDVLEPRFVDAALKQLGPYQKK*
JGI12023J11887_1006382	JGI12023J11887_10063821	F005599	PEQASKVTMRMPTLLPFGEGRVSGEAIDKSTRSIRRGSGHGTSERWFG*
JGI12023J11887_1006452	JGI12023J11887_10064522	F031228	MDHREIAVRVPVMNEVQFLFPFEPCKPLKSRSLYVVFLVEKDVRVERRRTCDCLNHEEVDWQYEVCTRSYQKHRNEEKGCIVAFVTEVGR*
JGI12023J11887_1006591	JGI12023J11887_10065911	F079254	MQTVARWGEPGRMLQVDPWSKAAECDRAIEFIADPERRIVLESLRSFWVALCNELSLLDQEDRVGPLSTINQIHTELMAVCRRAMH*
JGI12023J11887_1006911	JGI12023J11887_10069112	F069796	MKSITIVSILTALSVPFTATRATADDDYKKICRVNENLRVLDDDADANSCRAIAVDSQAQEYQIGCRDSENKGPIIVTAPFNINDKAATVTSSKLAANTQNTTTPGQFAKCAKVWGRR*
JGI12023J11887_1007086	JGI12023J11887_10070861	F065946	EPDVRTARTMAWACAGIAACNAVPACAAEPFHGRWAPDAQACIGEGVIASPVVVNSLSLQWREAACVVRTSYRVRDAWHIGARCWGEGAISNVPITLRMRGEQLLLGWAGAPAEELRRCP
JGI12023J11887_1007763	JGI12023J11887_10077632	F044758	NPAGGKEDDYGWVVQAMADCDVQAKHKLDTLYFLIIPVTTTGVSLPGWSPTTIGAVGDAVSLLHSSDTVIGLRNRALALYQKPLTFAVSDPRTKTVYKWKPAVGVTTLTTQDTDQPALTLGFEAPDLGKEIEWGPTINLTKGTCYWINPLILAAARSG*
JGI12023J11887_1008026	JGI12023J11887_10080262	F027285	MPEPLVTFRGAVRCARAPGPLGVTLIGETPERPGESTALAFSAAAPAGFPESLDNAVVERLGADQYRIYSPPREWVIAAAAVHLHREIAVQFYRAIPPRPVPLPKRWFWRVVLGLAASRAGLAALRALRR*
JGI12023J11887_1008048	JGI12023J11887_10080481	F008140	MVAGAVLGAIASAGATGANAQGVYLQGPGFGVEIGRPAYRDRYYRSYHDYDSPRFYSERRYQRGPYAYERRWRGRDWD*
JGI12023J11887_1008058	JGI12023J11887_10080581	F064046	XCEGFRMTAIRDDAACTGAVVRKPPMKETAGGVARWRVRRYGDLTAVVTECEYNFCDMARTLRMGENTFRRPCNFKELRVVKRAHITTFALCA*
JGI12023J11887_1008304	JGI12023J11887_10083042	F001868	GMATEFYFTPELHLKDGRIIRDLNDAASFAREQEVRPGVDQRDEVLHKTERAASKEDAHAAAHSFVRWLEELDVLE*
JGI12023J11887_1008366	JGI12023J11887_10083661	F002350	ISKEMEAHLLILVQLRNNAADCIRLAEAARTSAHKSLFIEMAERWLTLAERAEKTRG*
JGI12023J11887_1008504	JGI12023J11887_10085042	F094490	VHIALVVDQSVKFRLLVQPRTKPIGTYTYVITRTDDPDWGETTAEYFFTREAALAAGRAALDRILKRQTS*
JGI12023J11887_1008883	JGI12023J11887_10088831	F003794	MSLPDDTKTDDKEQCDNVIRLGTETLFAIAEQLRQMYDLDLRTKPSEKLERLMRRIERGDEPC*
JGI12023J11887_1009125	JGI12023J11887_10091253	F028604	MGACTIGDVSQDFRPVLELNPVYAVGERLHHDPLHE*
JGI12023J11887_1009138	JGI12023J11887_10091382	F004310	MLDRSLEAEFESYRKTLSTDEARRAFDELIERLLSQHGVDYVRGYVXALKDASF*
JGI12023J11887_1009407	JGI12023J11887_10094071	F013562	CFYARRHGRRLYMGYEETPETSPDITRDVARRTLAEGKRVFPALDVLGERDIRSAWCGRVFYTLDDYPFVERRHGGRVITFAAPSDHGNSLALRIGQLVGNAVAPSTLQPRSDDDIRQRRRNGQQLRLFESLPKGLRLRPGKRYQEAAYREPEAAVAEYARQTSDPDLP*
JGI12023J11887_1009881	JGI12023J11887_10098812	F024969	THPRAGRGDRLMDPALLQSAFRLGFVILALSLLVLPFEDRSSAEFVATVLAALIGLLFIGIVTVLARSSLPPPPRSQPRTMVDKAIGKGYNEPDSHSGGK*
JGI12023J11887_1009971	JGI12023J11887_10099712	F057531	MADTHALNNDRTRAADSDVDILGKLDYWRALLHERGLHTEAMVMGRAASEIRILREQVSEKLTKRRA*
JGI12023J11887_1010014	JGI12023J11887_10100141	F005599	MPTLLPFGEGRASGEAIDTRTRSIRRGSGHGTLERWFG*
JGI12023J11887_1010158	JGI12023J11887_10101581	F029882	MAGYTDKSRRYLRWAAANERRAASAHGGEFKTMLLWVAAQYRDLAEQTDNPERWRAKRAAAGARRE*
JGI12023J11887_1010433	JGI12023J11887_10104332	F036786	MIWRQREPTLKEILSDSIVTALMEADGVDPHELEAMLKKIGRMSESVQRVRPW
JGI12023J11887_1010709	JGI12023J11887_10107091	F052030	MPVDLRPAIPTLPARQGALNAHRESLVAKLATCITVLIATIAVLIVA
JGI12023J11887_1010795	JGI12023J11887_10107951	F055459	MGIFGRKVDDEFDALIHAIGRLLHGKGHDLQRAVLTDLVSRWIMGHHPSQRRQALAMHVQAVRDLIELNEDALATRNRGEPEDW*
JGI12023J11887_1010978	JGI12023J11887_10109782	F083042	DLERELTVGDADRADLTLHLLKSLQPAPITDRPHSWDY*
JGI12023J11887_1011322	JGI12023J11887_10113222	F099613	MAEIIILAERRKARQERRATNVMAMPFXLMAAYMACGAATYAAIVEASTAGLRRPQ*
JGI12023J11887_1011324	JGI12023J11887_10113241	F042436	MKLQQWRQRSLLLSDCCEQAVFCVLLLARAMNNENEKGREHDLRQGIVSLIRANEQALKKPITDEEVQKLKAAAGRLDQMLKAAVDTDGQVLRSAAARLDQLLEDIATGKDVTY
JGI12023J11887_1011399	JGI12023J11887_10113991	F001281	MGRILASLVLAASLLSVASSEASAWVCRAVGVGSGGWGRSASIVDAKLQALRRCEHRSPVPVCTILWCR
JGI12023J11887_1011666	JGI12023J11887_10116661	F099698	FDIDQNGTEGILSESQTLSNGNVLAAVETFDQTTGKILNVLVKTTTQDDFVTLGVVGNSVGLVEREHVISLFHVQRTFRLLNPLSANKFTGLWTPPIDTKHLLEEVSRNQGTTNVAVFASGFNANPVVFSSNVAANTFGPLVQLTDPAFTFGVPPVLALNTKTNQAVLAQDFGSP
JGI12023J11887_1011787	JGI12023J11887_10117871	F029482	SLCVVATSSVAAKHKSSAAAKHRSVTAKQRSVTPTPKQRPVVATDQTPTNKNDCLTVSQILYGRAEALSKGAKQAIPREFTRVASNLDESCGEEDFEKARISIDWMNTCLTNYTKDYSLGFCTRNKGYFCTINPRSDACLQSQ*
JGI12023J11887_1012464	JGI12023J11887_10124642	F026312	MTTFWLAFSDPDAPSDKRFLGVAIFDMDESGGELSVPEIVRRAHDLGINPGGQVLVQEVEAIPDEYKNRLITDDALLLKLGSRGRSITH*
JGI12023J11887_1012519	JGI12023J11887_10125191	F003104	MTLAGTERRRRQLVTAGLGTALTLVMGAVLIMGFRLATHMRANISALQTASMLQTYPVEISHQLNSLRDRLEVRAYSGQALADLQGTVKRFSQKLTELSVSGELDLPQLHRALLLWHQYAPVLDPVVSFSGQPYVDSDTAGSSLSREGHQHYAEVKRAQLFASDS
JGI12023J11887_1012708	JGI12023J11887_10127082	F045814	MRQFNVGEVVTFIPDWILRSAAPGDYKIVSSMPDRDGDHMYRIKSPLEEHERVV
JGI12023J11887_1012710	JGI12023J11887_10127102	F006963	MTRPLFMTLLCVLGTAQAFAQNRVSQQLLELDDDERNAAFTLMLKDSDRRCDQVVRTLFKGTILGVDEWEALCKDRNAYSISVLAELDEAIITSLTCRELLATS
JGI12023J11887_1012828	JGI12023J11887_10128281	F060961	MPDAVPPPTRDIVVVHSSDLHLDHDYTARLHGGDGTAGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000732: Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences