NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2088090012

2088090012: Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from high methane PC12-236-260cm



Overview

Basic Information
IMG/M Taxon OID2088090012 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046158 | Gp0051715 | Ga0026422
Sample NameMarine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from high methane PC12-236-260cm
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size191647483
Sequencing Scaffolds24
Novel Protein Genes31
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium3
Not Available12
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon1
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium TMED671
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCoastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment → Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine benthic biome → marine benthic feature → marine sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationArctic Ocean
CoordinatesLat. (o)74.0678Long. (o)-145.54687Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000918Metagenome / Metatranscriptome834Y
F003058Metagenome / Metatranscriptome510Y
F004192Metagenome / Metatranscriptome449Y
F005129Metagenome / Metatranscriptome411Y
F005817Metagenome / Metatranscriptome389N
F007772Metagenome / Metatranscriptome345Y
F007892Metagenome / Metatranscriptome343Y
F008695Metagenome / Metatranscriptome329Y
F010928Metagenome / Metatranscriptome297N
F012505Metagenome / Metatranscriptome280Y
F019651Metagenome / Metatranscriptome228Y
F019836Metagenome / Metatranscriptome227Y
F023447Metagenome / Metatranscriptome210Y
F023593Metagenome / Metatranscriptome209N
F036489Metagenome / Metatranscriptome170N
F043412Metagenome / Metatranscriptome156Y
F043621Metagenome / Metatranscriptome156Y
F045764Metagenome / Metatranscriptome152N
F045851Metagenome / Metatranscriptome152Y
F050383Metagenome / Metatranscriptome145Y
F056896Metagenome / Metatranscriptome137N
F062159Metagenome / Metatranscriptome131Y
F068251Metagenome / Metatranscriptome125Y
F072358Metagenome121Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
ASHM260b_contig00039All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1625Open in IMG/M
ASHM260b_contig00045Not Available1111Open in IMG/M
ASHM260b_contig00049All Organisms → Viruses → Predicted Viral1491Open in IMG/M
ASHM260b_contig00072Not Available1246Open in IMG/M
ASHM260b_contig00075Not Available1211Open in IMG/M
ASHM260b_contig00102All Organisms → Viruses → Predicted Viral1055Open in IMG/M
ASHM260b_contig00119Not Available982Open in IMG/M
ASHM260b_contig00127Not Available950Open in IMG/M
ASHM260b_contig00138All Organisms → cellular organisms → Bacteria929Open in IMG/M
ASHM260b_contig00181Not Available862Open in IMG/M
ASHM260b_contig00212All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon825Open in IMG/M
ASHM260b_contig00223Not Available801Open in IMG/M
ASHM260b_contig00225All Organisms → Viruses791Open in IMG/M
ASHM260b_contig00273All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium TMED67744Open in IMG/M
ASHM260b_contig00285All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium726Open in IMG/M
ASHM260b_contig00322Not Available697Open in IMG/M
ASHM260b_contig00395Not Available655Open in IMG/M
ASHM260b_contig00473Not Available619Open in IMG/M
ASHM260b_contig00496Not Available607Open in IMG/M
ASHM260b_contig00570All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon577Open in IMG/M
ASHM260b_contig00572All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon572Open in IMG/M
ASHM260b_contig00832All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium500Open in IMG/M
ASHM260b_GM9OZ8V02FWUJXAll Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon509Open in IMG/M
ASHM260b_GM9OZ8V02JYPUYNot Available520Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
ASHM260b_contig00024ASHM260b_01040890F003058MTDKEMNKLADIIVGKIIDRQKAYDEEFKADIQSMVDENTNLEFGTITQDEIIIEEIANLNKRLTQLESQESYEAAAIVVNKIKHLKTNTIYD
ASHM260b_contig00039ASHM260b_02185410F023593MSKIKEIDELAQYQADVILETLKEQVEWSIADYDLSGDDYYNLRDYTVYQTVIKLLEQVDIVDIDYYKQNTIISG
ASHM260b_contig00039ASHM260b_02185450F007772MATQSYQLLKISWNLYDTHYTKLTEEQRSKVWDIYYDFY
ASHM260b_contig00045ASHM260b_02638000F019836MQKANLELPVKQFHRLHDLLGDFLDHDAESGYFNMDNLDIDFLEDIRTELFNQIPDEKTYTDYALTGRSSNPSIQPGKLYKIVEKTSKYGFQLEVEDGE
ASHM260b_contig00049ASHM260b_02942330F004192MKNDFNEWMASIGNIYYADNELMSHAFEKLDNYEEIQCT
ASHM260b_contig00072ASHM260b_03283660F012505MIYNADEVTFILAKTLDEARQWAIMYCDHSDEIIVREVSDIKYKY
ASHM260b_contig00072ASHM260b_03283680F043412MEMTKEELERRVRELTASIETFTNDADLLKKDLAAANQRLAVVNRPKITQDQMTEIQDAINEIVSNIDFTDCNNYDVDFEIDYDSRLAISSIEFNNTHEIVDDISSEIECLFNVIQPEDE
ASHM260b_contig00075ASHM260b_03303130F000918MYKTNNQSWNEVSSTIKESNIRTKICIEMFGQENLIGLSNDQRELFWQSV
ASHM260b_contig00075ASHM260b_03303140F010928METQRFMGSGQLVDRLTAQVRDKGFAIALLKKRGDMAADGSLTAKGESRNRMTAEQRALDRADETSASATYNPKTNRVTKNK
ASHM260b_contig00102ASHM260b_00030030F007892MGRLQEISPQQDVVNKINAKADFTHNINNTRLERYTVSTQNVLKTSNPSLFSKNTWQIVAEAFHSDHELFGGWLSEDDIYFLDYGISISDLRIAMKFARVNNQLAIYDNVANKVIPVAD
ASHM260b_contig00119ASHM260b_00160380F045851MTLQDHNTINELIKFYQKNRSEADYKKGIQPIDGHKINSLMMANHLTGAKLDTNIY
ASHM260b_contig00127ASHM260b_00226900F005129MDYKVKIESRTLSINLMHHSTVDLGIFAVKATTHSFLFDGLKTEWGADINETEFEFYVNDKRCRYVGFKELYIQLYGDSFNTFEVDLTRQIEEVVAKRIAKEYPGCDVNF
ASHM260b_contig00138ASHM260b_00308370F056896MLSTCCDAEASYLSDDICGACKDHSDFYDEDEDETCRNGKEWNKCDCY
ASHM260b_contig00181ASHM260b_00649970F012505MSKFMIYNADEVTFILAKTLDEAKQWAIMYCDHSHEIIVREISDIKYKY
ASHM260b_contig00212ASHM260b_00899810F000918MYKTNQQCWDEVTQSIIESNIRTKICIDMFGQENLIGLTDEQKELFWQSV
ASHM260b_contig00223ASHM260b_00979170F072358TWDRILLMTPKQRVILIGSIILPGASLILIFSQLGRQIIQKLEKAKTSKTYGNIGLTNIELKEDLE
ASHM260b_contig00225ASHM260b_00995800F004192MKQDFNEWMASIGNIYYADNRLMSQAFEKLEDYEEIQCT
ASHM260b_contig00273ASHM260b_01357450F023447METQAFMGTGELIPRLMAQVGDAKFGMALANKNGFLNADGSLSAKGIARNGMTAEGRAIDRAGGTGVYNASTNSVTQP
ASHM260b_contig00285ASHM260b_01451840F008695MIKEYEISKVTHEWCESNDRWVYIEYNAQGKIIGLNFMQGDEYDYFKKSWCHNDQGLTDFYHSMLYTFPIEKASVNTLEFINKVMWSYHMAETCSEDHKEIK
ASHM260b_contig00322ASHM260b_01733030F068251VTKSNEKQMVLVSAETLCDLHLAAYDYDYKKYPTTGEDIMAAQNEARNALYACGWWQQGDED
ASHM260b_contig00395ASHM260b_02296010F019836LDHESETNDFNMENSDIELIEDIRTELFNQIPDEKTYTDYAITGRSSNPSIQPGKLYKIVEKTSKYGFKLEVEDGEEIFCLFKNCAFLNGRDWTIINVED
ASHM260b_contig00395ASHM260b_02296020F045764MILDMQLTDEEIKEIADRMDDLMWEGFHDIVDDVYRQREDSSYDYEIWDEDIIKVKTELKKHL
ASHM260b_contig00395ASHM260b_02296030F062159MEILTHYIEIDWSGVCEDYDLKHGDISPHQTFEIDLALNKINEVLNEFIK
ASHM260b_contig00473ASHM260b_02890040F043621MYKITLESTWTHNGTTRNWIKYLQVDNFMQIFDFYELDKIKEIEEC
ASHM260b_contig00473ASHM260b_02890050F000918MYKTNNQCWNEVSNSIKESNIRTKICIEMFGQENLIGLSNEQRELFWQSV
ASHM260b_contig00496ASHM260b_03072460F043621MYKITLESTWTHNGTTRNWIKYLQVDNFNQIFDFYELDKIKEIEEC
ASHM260b_contig00570ASHM260b_03263180F005817MRSNLLTRLKPEYKRGLEDNKLRYPAMISDLEFLLSQQFYYNDLTVNQVLNIFVFSDMEYLDRKNFDWRYGEDVFNVENNVA
ASHM260b_contig00572ASHM260b_03283710F050383MENLYEQLEELIDTIKYSHAAGDEDPDYLENDYFEDVVEACKEIVKYTNN
ASHM260b_contig00832ASHM260b_01812080F036489FTTMIGLCTFQVGVIFKQNQVNQVNEWRESIVESYILRTDNGTMLGYNINILDDERLFTYED
ASHM260b_GM9OZ8V02FWUJXASHM260b_01694600F003058MTEKEMDRIAEMVVDKIISRQKAYDEEFKAEIQEMVGKDADVEFGTITEDEIIAEELVKLQDRLNKLEAKEDYEAAGIVANKIKHLKTNTIYD
ASHM260b_GM9OZ8V02JYPUYASHM260b_00464160F019651MTTLEKFQELAKINFVQTPSHADVELGELQTADGYELYYVTQDIQNLNYENELFYYKPDFDTIMAAIDDYRHREDTANVACYDIEDWFDEYDMLNYLESEMDEESFEAFTNEEK
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