NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000276

7000000276: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 706846339



Overview

Basic Information
IMG/M Taxon OID7000000276 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052794 | Ga0031332
Sample NameHuman tongue dorsum microbial communities from NIH, USA - visit 1, subject 706846339
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size72299973
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1
Not Available2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella disiens1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria3
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043990Metagenome155N
F051211Metagenome144N
F051988Metagenome / Metatranscriptome143Y
F054110Metagenome140N
F067846Metagenome125Y
F072445Metagenome / Metatranscriptome121Y
F073671Metagenome120N
F094007Metagenome106N
F095630Metagenome105N
F099454Metagenome103N
F103431Metagenome101N
F105376Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
C3452542All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium659Open in IMG/M
C3457418Not Available697Open in IMG/M
C3475498All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella disiens929Open in IMG/M
C3477264Not Available967Open in IMG/M
C3491774All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1627Open in IMG/M
C3495250All Organisms → Viruses → Predicted Viral2197Open in IMG/M
SRS054687_LANL_scaffold_12126All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1116Open in IMG/M
SRS054687_LANL_scaffold_46830All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria849Open in IMG/M
SRS054687_LANL_scaffold_47560All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria731Open in IMG/M
SRS054687_LANL_scaffold_48704All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae16425Open in IMG/M
SRS054687_LANL_scaffold_52000All Organisms → Viruses → Predicted Viral4645Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
C3452542C3452542__gene_114277F043990MIKKFGIIFIFGVIILGIAVYANHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDKLDSSFTKLNKLPIKEDLPPNGIPKQFLNTTNGYYKYVVDENDDRDFGILIVDTTRKEICIYNQIF
C3457418C3457418__gene_116529F051988ALGAMKKATGSDMATFLFTKLRELYTKTINFKLVSTLEKGYAGNVMDDLDLSNAPASLASKFMDYRSRVDLFDAYLINVESALATKAVKGVTTTAYIAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIQEKAGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF
C3475498C3475498__gene_125548F099454MKASKLLWAVIMAFTFVFTSCDPFSQNEPTLEDRGYKYFDSTAQRKSFRVVTASGKSYNHKVDWHIIGILDQNSGTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGQDRSVFFETKNDYKRTTSPSMKVIQQAK
C3477264C3477264__gene_126530F072445MATVTDLVRGSQLRAKFIDYTSTYRDNNKEFLRGDMWEFKVLSAPKIVYYPGDDIINARLNSVQVGVDTSVTGIEKRMRGGYAIYQQTNQTTSGNLTLSFVDREDQAITYFLDDWRQKISDRETKYSFRKDDVVMDCKLFITNAQRLDVRELTFYNVIIQDAGIDNNGQAEAESDRS
C3491774C3491774__gene_135415F095630MIISSLYKTVENNGLLAHIYEHLLAQYVMKALQGRGFFISSDIILTAKTYGDTCFMDVEFYSPEAQDAYNEALRLFDKWDIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDITYRKADSKSSVNTLFRMPCIKYGVESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSRSPFCDNLQAALVRCSHNYEQVLLDRGALNSILGGCVIGGKGWLKMADNTLIGQILKAIEIDVYDI
C3495250C3495250__gene_138187F105376MDNTDKEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARANVTQAQLKAYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTVRRK
SRS054687_LANL_scaffold_12126SRS054687_LANL_scaffold_12126__gene_10151F094007CKKQGSFLCGVDYLWILWYNSYCMKSKTVEVLELARPNRAGIIDVVDSDGNVVPLDYSGEDFAPDVNSYSGKDFTKRNRIIVEMCDLFGRIRRRAGFAEYHRGRGNYDRARRIERNRGSDISEVGRLAINACESCPLKLDCELYGKLGEAVLNDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNDA
SRS054687_LANL_scaffold_46830SRS054687_LANL_scaffold_46830__gene_41664F103431MIDLDALIVRMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGSFGENIADCHAEDDNDKNAESQKEGFHVCIPEG
SRS054687_LANL_scaffold_47560SRS054687_LANL_scaffold_47560__gene_42672F051211TSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
SRS054687_LANL_scaffold_48704SRS054687_LANL_scaffold_48704__gene_44335F067846MESLQAQWERKTFNDYDRRCCAEDAYNEAVEREIENIEWDISHGDSEELCKFYEKISEDDEFLKAIALGNDFEEMRIKILTAMAEDRLEQLEEDYRKGFILND
SRS054687_LANL_scaffold_48704SRS054687_LANL_scaffold_48704__gene_44341F073671MNKEQAEHELAELHEKERSLEKALELVREKIRELINYTDKNKVQK
SRS054687_LANL_scaffold_52000SRS054687_LANL_scaffold_52000__gene_49949F054110VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGE
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