NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300034141

3300034141: Biocrust microbial communities from Mojave Desert, California, United States - 54SNC



Overview

Basic Information
IMG/M Taxon OID3300034141 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136120 | Gp0356274 | Ga0334958
Sample NameBiocrust microbial communities from Mojave Desert, California, United States - 54SNC
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size321930701
Sequencing Scaffolds30
Novel Protein Genes33
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria2
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → Oscillatoria nigro-viridis1
Not Available7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema → unclassified Tychonema → Tychonema sp. LEGE 072031
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera chwakensis3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema1
All Organisms → cellular organisms → Bacteria → Acidobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Biocrust Microbial Communities From Mojave Desert, California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)desert biome → desert → soil biocrust
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001042Metagenome / Metatranscriptome794Y
F005545Metagenome / Metatranscriptome397Y
F005599Metagenome / Metatranscriptome395Y
F005661Metagenome / Metatranscriptome393Y
F007252Metagenome / Metatranscriptome354Y
F007533Metagenome / Metatranscriptome349Y
F011201Metagenome / Metatranscriptome293Y
F011588Metagenome / Metatranscriptome289Y
F012744Metagenome / Metatranscriptome277Y
F017778Metagenome / Metatranscriptome238Y
F018295Metagenome / Metatranscriptome236Y
F035160Metagenome / Metatranscriptome172Y
F038520Metagenome / Metatranscriptome165Y
F042710Metagenome157N
F044000Metagenome155Y
F044877Metagenome / Metatranscriptome153N
F058553Metagenome / Metatranscriptome135Y
F078146Metagenome / Metatranscriptome116N
F083444Metagenome113Y
F085294Metagenome111Y
F093150Metagenome / Metatranscriptome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0334958_000737All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria10495Open in IMG/M
Ga0334958_000927All Organisms → cellular organisms → Bacteria9164Open in IMG/M
Ga0334958_002827All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → Oscillatoria nigro-viridis4680Open in IMG/M
Ga0334958_003807Not Available3922Open in IMG/M
Ga0334958_005411All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.3191Open in IMG/M
Ga0334958_013273All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis1872Open in IMG/M
Ga0334958_019969All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae1479Open in IMG/M
Ga0334958_022627All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.1377Open in IMG/M
Ga0334958_022968All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.1365Open in IMG/M
Ga0334958_025687Not Available1280Open in IMG/M
Ga0334958_025835All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema → unclassified Tychonema → Tychonema sp. LEGE 072031276Open in IMG/M
Ga0334958_031822All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.1139Open in IMG/M
Ga0334958_032476All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.1127Open in IMG/M
Ga0334958_034562All Organisms → cellular organisms → Bacteria1087Open in IMG/M
Ga0334958_037956Not Available1033Open in IMG/M
Ga0334958_041748All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.981Open in IMG/M
Ga0334958_051612All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales876Open in IMG/M
Ga0334958_070344All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria743Open in IMG/M
Ga0334958_076087All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria713Open in IMG/M
Ga0334958_077118Not Available708Open in IMG/M
Ga0334958_077336Not Available706Open in IMG/M
Ga0334958_080674Not Available691Open in IMG/M
Ga0334958_081741All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.686Open in IMG/M
Ga0334958_085552All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.670Open in IMG/M
Ga0334958_109311Not Available592Open in IMG/M
Ga0334958_114503All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera chwakensis578Open in IMG/M
Ga0334958_122782All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera chwakensis558Open in IMG/M
Ga0334958_137798All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema527Open in IMG/M
Ga0334958_141259All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera chwakensis520Open in IMG/M
Ga0334958_144257All Organisms → cellular organisms → Bacteria → Acidobacteria515Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0334958_000737Ga0334958_000737_29_694F005661MQFRVAKTSGAEHVAREFGYHSGPITPEMVNEAARTAKILDLQKQLRTAYNRHDARIRANKVELERLTLEAIEGGLTDKAQIDKYVGKAIVAGAKHDQHIVDLNQQLQHELNLVKVQGASTQTLANTGFRQRLLLIKANHTAKGQIQLHSFAQSLKAIQASPQQAIDMQQKRANFNAYINAKDFDPIPAVSGVSARGNSSDTGNNSKGFLHGLFDFFSGRK
Ga0334958_000927Ga0334958_000927_8758_9135F001042MTFTGDCPEGRSQDLTCAGADGKIVIDKMLVNKLTELLITSIYSVHTSRCSEIFLTSLDLHLAQYSISNKNDTAHREFSEKSALLLESYQEDVPKSLGKAESCLGEAIDLINLIVSASEAGVNNE
Ga0334958_002827Ga0334958_002827_4075_4311F058553MAQTRAVLPARFVPLADELLATTGASDYSTLIGILLSRYGKHLLNTWEIANCPQTAVVQQPIASVSIEQPETFTPMEF
Ga0334958_003807Ga0334958_003807_298_684F001042MTTSHLIGGNEASDVPKDFEADADDTIVINKLLVNKLTELLINSIYSVHVSRRSEFFLTSLDMHLADFSISNKNDIVCREFTEKSSLLLESYQKDVPKSLGKAESCLGEAIDLINLIVSASEAEVNNG
Ga0334958_005411Ga0334958_005411_91_429F007252MKKSKQKSKDGRGGARPGAGGGVRWKHGRTKLVRLPVALLDEILEVARYMDQNEGRLPLFASPVITSAHPSESLSGEELEEFFAKKKAQKLAQQVMAGDEWVLVSDETFQAF
Ga0334958_013273Ga0334958_013273_1411_1872F044000SSSGGSLDQIRSAAKRLKTWGLTETPEELATRALAIIDSAVHPRASAIVLDTAMGPEMIAARSAASAEDPRLVERVVLADEETSVGTLLVGRRSDGHRYNRQELAAIQEIVPSLAAALRVSRGRYSRESHMQQRLDEMAARLAQLEGGAAKPA
Ga0334958_019969Ga0334958_019969_1174_1404F042710MAENSGENCERSQIFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEAVLETHGEEKPAKPQFVVKPNQP
Ga0334958_019969Ga0334958_019969_42_383F011201MKKSKAKSKNGHGGARAGAGRRWRWKHQPVKMVRLPVAFLEKILELADYMDQHDGQLPFAEASVITSGHSSKTLSGEELKEILGKEKAGKLAQKVMVGDEEVLVSDETFRQQH
Ga0334958_019969Ga0334958_019969_594_1142F083444MLNNMSEVFSCEEVALENTHLLPEYGKKVIYFVTAMQGESKTFLYIGFTINLRRKFKNHHRKIEFEFLNRIGYQIKISWIVLPNGIREKEGHVVQRCYIQAFEPKLNEDQNSIATVQAEELKKQFENWEQRRYEYLKKEIENWEQSGDDKDTIIKKIWEVCKQPFDDKHLILSPSKSQKTAV
Ga0334958_022627Ga0334958_022627_2_325F001042MTTSHPIEGNFASHFLKDSEAEADDKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLVKAENCLE
Ga0334958_022968Ga0334958_022968_797_1213F001042MLNQAVIIKLMTTSHLIEENFTSDFPEDSKAEANEKIVIDKLLVNKLTELLINSIYSVHISRRSEIFLTSLDMHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLVKAENCLEEAIDLINLIVSASEAEGDNG
Ga0334958_025687Ga0334958_025687_1_366F001042EGNFSSHFLKDSEAEADDKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAQDSISNKNDAARRDFTEKSSLLLESYREDVPKLLGKAESCLGEAIDLINLIVSASEAEVNN
Ga0334958_025687Ga0334958_025687_786_1088F038520MKYPKIKHGGSRAGAGRPHKYQAGETKLVRIPVAYVDKILRVVSYMDANDGQLPPDIAFATEGEDFSCPGYDASRELPYPDFDGYNKRHRNSTFGKNFHK
Ga0334958_025835Ga0334958_025835_508_1266F093150LFTIKGNLVFMNKLYQKVAFASVCTALSFALVANKEAKAAVFTLTPTLSFSVGDRDAQDGLGDYISGDVPLPVGIINGGGYRQEYRALYEFNLANLSLAPNTVISSAILGVKANNISYGRFAELKMYGYIGNGQADVSDFESGEYLERKYLYTELLNDTIPGIKPSKFFNFNVLPFISQSIKNNDASAGFSLRIDDGYFTANKDASLTIITADVTESVPEPTTILTAAVALGWGGWLKRKNSSQQHKTKSQD
Ga0334958_031822Ga0334958_031822_2_367F001042GGNFASDVPKDFEADTDNNIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLASLDMHLADFSISNKNDAACREFTEKSSLLLESYQKDVLKSLGKAESCLGEAIDLINLIVSASEAEVNN
Ga0334958_032476Ga0334958_032476_481_1125F012744MSHRNDCPAGRSQFLTRGSLFKNHAAKVYVLDRITHGTAPEILSRASAACRFESPHTEVSEQKWREYFGLPVMSLSAAAEYYGLSVSELEHHARKKNTYAGGLFESGMLVLRGAALESAREMEHTAGIQQGLVLLPPRAVLHLCLYLRPVPAVAATVNAFWDYVLAEKLHESTAADWYYTSTQHVEIECERIEEQRLLECLTEAKERKLYPYIQH
Ga0334958_034562Ga0334958_034562_105_455F011201MKKSKAKSKMGHGGARSGAGRLPLWKHRPLKMVRLPVAFVEEILKVAHYMDQNEGRLPFSEASEDLGIISGHPSKSLSGEEIKELAPREKARKLAERVMVGDEWVLVSDETFRNQH
Ga0334958_037956Ga0334958_037956_618_857F035160VYLTEEYIMSVVQQDLTASEQSMSKAIAQAWLSGVPEGTMIGDMPLPAKPDDLTEEQISDWLEGRAEGFPGGTIPASCS
Ga0334958_041748Ga0334958_041748_2_661F012744MSQTNDCPAGRSQHLTHGVFFKNHVAKVYVFDRIRHGTALDILSRASAACRFESPDTAVSEHQWREYFGLPVMSLSAAANYYGLNVSELEHHIRRKITYAGGLFESGMLVLRGAALESAREMGHTAGIQQGFVLLPPRAVLNLCLYLRPVPAVAATVNAFWDYVVAQKLHESTSADWYYTSSQHVEIECDRIEEQRLLECLAEAKERKLYPYIQHFGRQT
Ga0334958_051612Ga0334958_051612_746_874F005599MMRMPTRLHNGEGRVDGEAIDICTHSIRRGSGHGTLEGWFGQS
Ga0334958_070344Ga0334958_070344_48_626F005661MAHEAARTAKILDLQKQLRTAYNRHDAKIRSNKVELERLTLEAIEGGLTDKAQIDKYVGKAIVGGAKHDQHIVDLSQQLQHELSLVKVQGASTQTLANTGFRQRLLLIKASHTAKGQIQQNGFQQSLKAIQASPQQAIAMQQKRSAFNNYINAKDFDPIPNVSGGSAGGNSSVSNDSKGFLGSLFDYFSGRK
Ga0334958_076087Ga0334958_076087_1_495F085294EASEAGEVCRLDAGSAGVFTEGDVADVMAPIFNAPVASDRLAERLGAESDLAGVEGDFLGFMPEAGLRVLVPGQAGDAGGLDDQAVPLGVELALDVEGLDLAGFIAAVAPGIDAFEAVGRRLGGGDALERGQQGRLIGLDLGEQGVAAVAGRLKGFFDNGGRLR
Ga0334958_077118Ga0334958_077118_2_181F007533MTPEYRLERITETIRAIKIGVPISKTLVMLLLEPWPDLYRDAMTREGMGWINLLQAAAAR
Ga0334958_077336Ga0334958_077336_525_704F018295MFNQAMTIKLMTTSHFIEENFTSDFPEDSKTEADKKIVIDKLLVNKLTELLINSIYSVHV
Ga0334958_080674Ga0334958_080674_157_459F044877MVTLDHKTLEEIFSLIGDCVDTIINLRHSGVFITSAKRCLLDTGNLELASSTEVSEAALLLDTWLDVVPKSHKEMDAWLQQANAITYLALAPIKLGKSNG
Ga0334958_081741Ga0334958_081741_61_477F078146MQGESKKIIYVGFTPNLRKKFKDHKRKMEFEFLDRMGYQINISWIVLPDRMREKEGQVIQMCYIRAFEPKLNTYQNTFAAVQVEESKKRIENLEQCKYEYLKKQIENWEQSGDDKDTIIKKIWEAGKERPMVSIGFVH
Ga0334958_085552Ga0334958_085552_50_499F001042MSPTLQRFFGFILTQVVIIKLMTTSHSIEGNLESDFYKDSETEANDKIVIDKLLVNKLTELLINSIYSVNISRRSEIFLTSLDMHLAENSVSNKNNKASREFTEKSSLLLESYQKAVPKLLGKVESCLEEAIDLINLVVSASVAGGENG
Ga0334958_109311Ga0334958_109311_297_554F011588MDQQKIYPFSKAFVMKTTFRHMRRSIDISINKTFERLRDFDQNSEAGLEIMETLSTLHICRKMLDDFQKHNPNQFSDKLSNNKEV
Ga0334958_114503Ga0334958_114503_2_460F017778AKGKTKGKRGGIRPGAGNPYKWKHGETKPVRLPIVLIPKILEIAQLIDGQEYINRVEHEFDDEEGSPKYYNGYYAGQLMYLRIGNDELASEVRNLRKENEVLKAQLMELNNGVLPEPLPDFSNLLFVSEPKPLAKQDRRKKRKGTFFVEKQV
Ga0334958_122782Ga0334958_122782_75_557F007252EKKVKNNSRKLMNNKVHPFFEDVTLWDFNMKKSKGKSKCGRGGARPGAGGGCRWKHGRTKLVRLPVALLHEILEVARYMDQNEGRLPPSAPPVITSGHLSESLSGEELKEFLAKKKARKLAEKVMCGDERWWSAIKPLQLLIFLMFPQPKKLGQAADEIF
Ga0334958_137798Ga0334958_137798_3_284F038520KRSKHGGKRIGSGRPHKWQGGPTKLVRIPISYVEQILRVVDYMDANEGRLPTGIAFHTEGENFTMPDYDPSSELAYPDFDGYNKQYRNSTWNR
Ga0334958_141259Ga0334958_141259_2_385F007252MNNKVHPFFEDVTLWDFNMKKSKGKSKSGRGGARPGAGGVCRWKHGRTKLVRLPVALLDKILEVARYMDQNEGRLPPCTPPVITSGHLSESLSGEELKEFLAKKKARKLAEKVMCGDERVVVSDKTFA
Ga0334958_144257Ga0334958_144257_23_265F005545MEERNEQAVDDRGTTETGGREILKRLRDQGFDADDEKLAVALGRPVEEVQGWMTGSPEEPVDDDIVMKARGIAKERGIEL
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