NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300034138

3300034138: Biocrust microbial communities from Mojave Desert, California, United States - 51SNC



Overview

Basic Information
IMG/M Taxon OID3300034138 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0136120 | Gp0356271 | Ga0334955
Sample NameBiocrust microbial communities from Mojave Desert, California, United States - 51SNC
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size383817356
Sequencing Scaffolds29
Novel Protein Genes30
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis1
All Organisms → cellular organisms → Bacteria4
Not Available4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis → Nannocystis exedens1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes1
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Biocrust Microbial Communities From Mojave Desert, California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)desert biome → desert → soil biocrust
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000265Metagenome / Metatranscriptome1420Y
F001042Metagenome / Metatranscriptome794Y
F003495Metagenome / Metatranscriptome483Y
F006886Metagenome / Metatranscriptome362Y
F011201Metagenome / Metatranscriptome293Y
F014784Metagenome / Metatranscriptome260Y
F017778Metagenome / Metatranscriptome238Y
F018295Metagenome / Metatranscriptome236Y
F035160Metagenome / Metatranscriptome172Y
F035205Metagenome172Y
F037589Metagenome167Y
F038578Metagenome / Metatranscriptome165Y
F042189Metagenome158Y
F044877Metagenome / Metatranscriptome153N
F050037Metagenome / Metatranscriptome146Y
F059598Metagenome133Y
F061723Metagenome131Y
F062389Metagenome / Metatranscriptome130N
F066114Metagenome / Metatranscriptome127N
F078146Metagenome / Metatranscriptome116N
F083444Metagenome113Y
F083733Metagenome / Metatranscriptome112Y
F093150Metagenome / Metatranscriptome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0334955_000102All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria66265Open in IMG/M
Ga0334955_000160All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales48553Open in IMG/M
Ga0334955_001164All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae10021Open in IMG/M
Ga0334955_001220All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.9716Open in IMG/M
Ga0334955_001575All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis8216Open in IMG/M
Ga0334955_002168All Organisms → cellular organisms → Bacteria6690Open in IMG/M
Ga0334955_002744All Organisms → cellular organisms → Bacteria5802Open in IMG/M
Ga0334955_003027Not Available5477Open in IMG/M
Ga0334955_003058All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Nannocystaceae → Nannocystis → Nannocystis exedens5456Open in IMG/M
Ga0334955_003963All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes4666Open in IMG/M
Ga0334955_007024Not Available3259Open in IMG/M
Ga0334955_008206All Organisms → cellular organisms → Bacteria → Acidobacteria2951Open in IMG/M
Ga0334955_012039All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae2297Open in IMG/M
Ga0334955_017884All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.1753Open in IMG/M
Ga0334955_028773All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.1287Open in IMG/M
Ga0334955_032142All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.1204Open in IMG/M
Ga0334955_033662All Organisms → cellular organisms → Bacteria1171Open in IMG/M
Ga0334955_036367All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales1118Open in IMG/M
Ga0334955_039045All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1073Open in IMG/M
Ga0334955_042249All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.1025Open in IMG/M
Ga0334955_047182All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium965Open in IMG/M
Ga0334955_068122All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales793Open in IMG/M
Ga0334955_070976All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.776Open in IMG/M
Ga0334955_088802All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.692Open in IMG/M
Ga0334955_090430All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.686Open in IMG/M
Ga0334955_094761All Organisms → cellular organisms → Bacteria670Open in IMG/M
Ga0334955_126527All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → environmental samples → uncultured Microcoleus sp.581Open in IMG/M
Ga0334955_146627Not Available541Open in IMG/M
Ga0334955_156610Not Available524Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0334955_000102Ga0334955_000102_54319_55065F083733MKQTSDKLEFQEMFAFWGQLLVGGIFLVIGLLFGRSSGNFLVYLFAVVGLLLVIFVEIDTITFDKNLGLMTIKRHKPLLAKTKVVKHLIQDISGVEIQEMRSRESSNTYRVCLLLELGKRRVPLTSSFTNGLGDKHKKAEVIASFLDIRNYGLGGFASQETSSEELQWKTVEEEILHWETAIKSDPTDADAHIKLGLALIRQDKTKNKQQAMGYLKQAEAIFKSQGYDEEAMQVAQLHGMAYLGMLGK
Ga0334955_000160Ga0334955_000160_8883_9122F035160VYLKEEYIMSVVQQDLTATEQERSKAIAQAWLSGVPEGTMIGDMPLPAKPDDLTDEQISSWLEGRAEGFPGGDIQPSCL
Ga0334955_001164Ga0334955_001164_1725_2027F044877MVTLDHKTLEEIFSLIGDCVDTIINLRHSGVFITSAKRCLLDTGNLELASSTEVSEAALLLDTWLDVVPKSHKEMDAWLQQANAITYLALAPLKLGKSNG
Ga0334955_001164Ga0334955_001164_9242_9703F017778MAKGKTKGKRGGIRPGAGNPYKWKHGETKPVRLPIVLIPKILEIAQLIDGQEYINRVEHEFDDEEGSPKYYNGYYAGQLMYLRIGNDELASEVRNLRKENEVLKAQLMELNNGVLPEPLPDFSNLLFVSEPKPLAKQDRRKKRKGTFFVEKQV
Ga0334955_001220Ga0334955_001220_8143_8658F083444MSEVFSLEEVVWENTHLLPEHEKKVIYFVTTMQGESKTVLYIGFTINLRKNFKNHHRRIEFEFLNRIGYQINISWILLPDGTSQKEGQAVQMCYIRAFKPKLNDDQNSIAKVQDEELKKHIESRQQWRYEYLKKQIENWEQSGEDKDTIVKKIWEVCKEPFGDKNLNSLAT
Ga0334955_001575Ga0334955_001575_3617_3859F037589MAIPRIIPASALTPGLATIIVSLPGRTIRSRVFMVEQRPHGAVNVAFASGDMVTLSARTMVGSIEYASHRPRSPRTRNAS
Ga0334955_002168Ga0334955_002168_6329_6688F001042NFTSDFPEDSKTEADKKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLVKAENSLEEAIDLINLIVSASEAEGDNG
Ga0334955_002744Ga0334955_002744_4681_4911F000265MAELRGAIAPPEIKAEWERAYQLYREAPGAPHDKKLDRTERISYVALKLNLTRKQAKRRIRNYEAWQRNISKGLVD
Ga0334955_003027Ga0334955_003027_3252_3629F001042MTLTEDCPEGRSQDLTCAEADGKIVIDKMLVNKLTELLITSIYSVHTSRRSEIFLTSLDMHLAEYSIRNKNDTACREFTEKSALLLESYQEDVPKSLGKAESCLGEAIDLINLIVSASEAGVNNG
Ga0334955_003058Ga0334955_003058_4370_4597F037589MTTPRIIPASALQPGLATIVVSLPGRTIRSRVFMVKLRHDVVDVAFTSGDMITLMARTAVGCIEPPAAKPRRRAS
Ga0334955_003963Ga0334955_003963_2561_3322F014784MSNWQEDRTEKLREFFALDAARALLAPDSAAKLELRPEVDEGLRHFHIEGHVIPATEAVPLDDDYFARLYPVAPRDFTKTREHGHSYRQQILHGHAQHQGRVIGVETTTKPRYLPGNRQFYGTTYGHDAAADPFAAYMGRAGMMNGMRYAHNYLSLRTFINVVNEDWRARRLLPAGYRATVCPPAVFNLVGAIFHPEWSETETLELGFYRDEQGNATCFAVGSNAPGDFSYVNEVEGEAEWSMMGFRLALVPE
Ga0334955_007024Ga0334955_007024_1526_1777F037589MNGARPARMIPASALTPGLALIILRLPGRTIRSCAVMVQAQPHGVVQVAFASGDVLTLSARTMVGSIDRPARSRPPPRTRSAS
Ga0334955_008206Ga0334955_008206_955_1281F061723MSEETTQNMPTNGGQSFEERVFARFDALDSSMGSVRAELRDIDARLQKLEARAYDTKPIWEQALKEIIETRRELSKRLDRIEAVVHETRADLRDAEDRIEKLESEPTR
Ga0334955_012039Ga0334955_012039_438_788F011201MKKSKAKSKTRHGGVRPGAGRPRRWKHGPLKMIRVPVAFAEKILEIAQYMDQNDGRVPCTEAYEASIVISGHPSVSLSGEEIKELSAKRKAQKLAQKVMVGDEWVLVTDETFKEFL
Ga0334955_017884Ga0334955_017884_1476_1742F078146LPEGTRDKQAQVIQAYYVRAFEPKLNIHQNTFAAVQVEELKKRIENLEQCKYDSLKKQVENWEQSGDDKDTIIKKIWEVGRDCLMVNI
Ga0334955_028773Ga0334955_028773_550_936F001042MTTSHFIGGNFASDVPKDSEAEADENIVIDKLLVNKLTELLINSIYSVHISRRSEIFLTSLDVHLAENSISNKNNKASHEFIEKSSLLLESYQKAVPKLLGKAESSLEEAIDLINLIVSASEAEGDNG
Ga0334955_032142Ga0334955_032142_2_181F018295MTTSHFIGGNFASDVPKDSEAEADENIVIDKLLINKLTELLINSIYSVHISRRSEIFLTS
Ga0334955_033662Ga0334955_033662_586_1170F066114TQLCVHSPRPFRIRHGLTYEPDALVTSTTHQDGHVSKIISGRNVVLAFRLSGVEADFPNVATQNKIVQDLSTRTKNLANLKKWVLSEDQHLKYFKGEKQGTTGLYVSGRAKLNQPRADAWISKAEALIARADGGRGRSNVESAFVDNFFHHLTRSDDHGWCRDSLDAYVDFARAGMGGSLGRVLDTLSRAGTGA
Ga0334955_036367Ga0334955_036367_136_585F042189VPDLYEVLLVDGGQRWHAGWLVDDDSETDVLMRDKGRVPVFGSRAGLEHHAQEHRLELLDDLPDEIDLDLGGWLSQGMPLPPTAEVSELWHLLYDDPVAGKALSGELLGEAYDDLVEEAPDWFSTHGPAARKALADAVSRLRGVLSRPA
Ga0334955_039045Ga0334955_039045_318_782F006886MYQDFDASEFDYLSTATPQQFEQQNQTQTPEVTNIERFWNLTGNWGEFGSYFGAGLSASLVVRAVPALIPAAVILIPAASLGLLVHTLTADGPAKLRSQLILIAIGTALLSANWDAWLAWVVANSQLLIFSFLVVVIVLGFVGTQIWSRLNVSQ
Ga0334955_042249Ga0334955_042249_52_438F001042MTTSHLIGGNFASDVPKDFEADTDNNIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLASLDMHLADFSISNKNDAACREFTEKSSLLLESYQKDVLKSLGKAESCLGEAIDLINLIVSASEAEVNNG
Ga0334955_047182Ga0334955_047182_145_609F035205MGADSKRVKFGLTWSQRRAFAFCVLGFQVLVWADALLNEGRFGGSWRTALVGLLLLGMAAATWWVGTSATRRGLVIHSVPSMVIPWDEVHEIEVELSLGISTVVVHHGERQRTRLSAPTTGPMGRDEQFQEKVRVLRTFWAAHRAAQQPGQQAA
Ga0334955_068122Ga0334955_068122_383_631F038578MSDELVVLRGGVRDGESTTVQEGVRRLLAASDAPGLVEVYEANGETGNVAGNSEAALVFVHVGQEPAGDIAPELQHSPRPAP
Ga0334955_070976Ga0334955_070976_182_775F093150MNNLYQKVAFASVCTALSFALVANKEAKAAVFTLTASPSFSVGDRNGQDGLGDYISGDVPLPVGIINGEGNRQEYRALYEFNLANLSLAPNTAISSVIFGVKANTISSYGRWSRLDAHGYIGNGQADVSDFEAGEYLDGRYLYSVLLNTTIPGIKPSPFFYFDVLPFISQSIKNNDTSAGFSLRIDDAYLTLNQDARL
Ga0334955_088802Ga0334955_088802_84_284F062389VHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLGKAESCLEEALDLINLIVSASEAEGDNG
Ga0334955_090430Ga0334955_090430_157_543F001042MTTSHLIGGNEASDVPKDFEADADDTIVINKLLVNKLTELLINSIYSVHVSRRSEFFLTSLDMHLADFSISNKNDIVCREFTEKSSLLLESYQKEVPKSLGKAESCLGEAIDLINLIVSASEAEVNNG
Ga0334955_094761Ga0334955_094761_2_109F050037MIKKFLRDETGLELSEYAVAAALVALAVITAFTTLG
Ga0334955_126527Ga0334955_126527_422_580F018295MTTSHLIGGNFVSDFPKDSEAEADDKIVIDKLLINKLTELLINSIYSVHISRR
Ga0334955_146627Ga0334955_146627_51_308F059598LLQKQKIQGDKARMKLSKKKKVGGTGRPHKWASGKTKTIRVPVAFLKEVLAFISELDRREVDRREQQRKESFKPFIKLGHPDPWK
Ga0334955_156610Ga0334955_156610_384_503F003495MKENNEKKMENCDEISKLIKAFPKDIAALDKRSVLAKVR
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