NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033494

3300033494: Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.226



Overview

Basic Information
IMG/M Taxon OID3300033494 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0344148 | Ga0316612
Sample NameMicrobial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.226
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size272991327
Sequencing Scaffolds16
Novel Protein Genes17
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Flectobacillus → unclassified Flectobacillus → Flectobacillus sp. BAB-35691
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lake → Sediment → Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → sinkhole → microbial mat material
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Michigan
CoordinatesLat. (o)45.1993Long. (o)-83.3279Alt. (m)N/ADepth (m)185
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001506Metagenome / Metatranscriptome681Y
F007965Metagenome / Metatranscriptome341Y
F011397Metagenome / Metatranscriptome291Y
F014119Metagenome / Metatranscriptome265Y
F020177Metagenome / Metatranscriptome225Y
F023591Metagenome / Metatranscriptome209Y
F025749Metagenome200Y
F057876Metagenome / Metatranscriptome135Y
F058147Metagenome135Y
F064603Metagenome / Metatranscriptome128Y
F084884Metagenome / Metatranscriptome112Y
F087946Metagenome110Y
F088111Metagenome / Metatranscriptome109Y
F092108Metagenome / Metatranscriptome107Y
F102832Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0316612_1000321Not Available16030Open in IMG/M
Ga0316612_1000598Not Available10405Open in IMG/M
Ga0316612_1001161All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage7178Open in IMG/M
Ga0316612_1001345All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia6642Open in IMG/M
Ga0316612_1001715Not Available5878Open in IMG/M
Ga0316612_1001995All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5420Open in IMG/M
Ga0316612_1006452All Organisms → Viruses → Predicted Viral2992Open in IMG/M
Ga0316612_1012194All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Flectobacillus → unclassified Flectobacillus → Flectobacillus sp. BAB-35692173Open in IMG/M
Ga0316612_1015258All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium1935Open in IMG/M
Ga0316612_1017867Not Available1785Open in IMG/M
Ga0316612_1019871Not Available1687Open in IMG/M
Ga0316612_1030674Not Available1330Open in IMG/M
Ga0316612_1048700Not Available1019Open in IMG/M
Ga0316612_1091426All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium682Open in IMG/M
Ga0316612_1091862All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium680Open in IMG/M
Ga0316612_1107406All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta613Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0316612_1000321Ga0316612_100032115F023591MSCSGGKSTKKGRYNKANNLKPPVSYTIDSKGNVKPKYN
Ga0316612_1000598Ga0316612_10005983F092108MGILRISAKCSDLCWTEYTDAKGNKTESDGYVPEGIGISSDGDCGDYVSLDIDMQTGQIQNWKPVSDARVIKAQKSA
Ga0316612_1001161Ga0316612_10011613F014119MKINRESISKIIKPALNVIIVVSIGTAMFQLGGIYQSSKKGVVKVKNPYSHAFSPEEISIAVNESNELIMIERSTGEYIVYSDKIGQTIFGMYANRIHQEATNAGK
Ga0316612_1001345Ga0316612_10013455F087946MLSKQRIPDLIVILVLGLFLTLLNYTGTIGVVSDYPFIFMLIMYFVGRAVTWYVINKHFEEDEGE
Ga0316612_1001715Ga0316612_10017154F025749MKKQMTIREIRRVLFETEKYTVIGADEMTNKESRDFLYAKDNQDENMNVIDNGSYLLIWK
Ga0316612_1001715Ga0316612_10017155F007965MEVKKGGKRKGSGRKKAEYETKTIAFRVRIEFVEPIKKMVKDYVS
Ga0316612_1001995Ga0316612_10019953F064603MTIKKFDYSKSTEDIFYKIIYPIYAKEFLFGSKYNNFAFIVAANFILNAPQWEYILEHWEQKESILTIENK
Ga0316612_1006452Ga0316612_10064524F057876MEGMRIRGNRETKVDKANLIEQIKLNKKNHVREYEKAILAYKEEALNQLSKEFKRVENGALDAKLDLITPINNAKNYDKIIEMFEWEVEDYVVLTQAEFNEYVQDETEFARQAKFSNTFYSNSI
Ga0316612_1012194Ga0316612_10121942F025749METRLTVREIRKILFDTDYYTVIGSVERSNKESRDYFYWLDDQDEIFNVINNGKYLLIWK
Ga0316612_1015258Ga0316612_10152583F020177DRLRGYVTELRVDARWILRKDEDDKPYGSLRIVSHPDLKPGYLRAIFTYVTTIRPKSREEKLQTIEDYQMEITELEVYSISEDIKTENKTYEAPYKELEELFGVKVFEK
Ga0316612_1017867Ga0316612_10178675F102832MMINTPPNPHLHKAVVSGSYYLVRYCGGSYDDYYSAVVFVTNKKSTAKKYCSKFNKALKKWKVYYEQFETDTFGMKWIADEHIEKHFDRWNGLKNITKCYYEDVSFR
Ga0316612_1019871Ga0316612_10198713F058147MQRQSIIVFIQGERIETYGNLKKCCECEGLKYHTLARLKFPIRINDVVIHKTLFK
Ga0316612_1030674Ga0316612_10306743F011397MKDFELLKRTYPVSHYERFCDGFDFIRKNSSEEERLEWGINLNDLQRVIKIGEKYIYQVAKEGKEFKTMCLCFKNYEIIRKNIFKLDDE
Ga0316612_1048700Ga0316612_10487003F007965MKKKKETRGGKRPLSGRKKADYETKTISFRVRVEFVEPIKKMVKDYVLDL
Ga0316612_1091426Ga0316612_10914261F088111SSYGFLLVNQQAYQNVFSENPTNGPTGYDHLTYSFSSPAGNSFFAILDPYYVNKDTVKEGLGGNIDSTQMSWLKNQVAKTTATHKFLFIHTPYYYVFSDTNELAEANQSFTNLWAFLDAKKFDIYACEHSHLFARRTIDSSILPNPPTTPPTPLWQNNVVQLLNGTCGADPSTGYIDPDFKASWNVHNDAQTFYFSVVDIKGSTVTVNSYSGSTGAYSVFDTFSVTR
Ga0316612_1091862Ga0316612_10918621F084884QSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGQLLAK
Ga0316612_1107406Ga0316612_11074062F001506MNRILYESRCRCKEEISIIPKRKLSARSEGKPLQYPNEMMSKTFQIKYEKKLSSLARFILNSFRNKYIYYAIDDILYLLKSNPVERESLLALLYSPVLSLHNNLCINFFDIWIHEVYINETSKVNKFLNNEYQNLEQFTYITIKFLYKTRVPVKKPDSLW
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