| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300033420 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129088 | Gp0344144 | Ga0316608 |
| Sample Name | Microbial mat bacterial communities from Middle Island sinkhole, Lake Huron, Michigan, United States - MIS.2016.152B |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 393532374 |
| Sequencing Scaffolds | 24 |
| Novel Protein Genes | 27 |
| Associated Families | 20 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 3 |
| Not Available | 8 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 3 |
| All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium GWF2_41_31 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lake → Sediment → Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → sinkhole → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 45.1993 | Long. (o) | -83.3279 | Alt. (m) | N/A | Depth (m) | 185 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002371 | Metagenome / Metatranscriptome | 566 | Y |
| F002525 | Metagenome / Metatranscriptome | 552 | Y |
| F007838 | Metagenome / Metatranscriptome | 344 | Y |
| F011397 | Metagenome / Metatranscriptome | 291 | Y |
| F016728 | Metagenome / Metatranscriptome | 245 | Y |
| F017253 | Metagenome | 242 | Y |
| F020177 | Metagenome / Metatranscriptome | 225 | Y |
| F022996 | Metagenome | 212 | Y |
| F025922 | Metagenome / Metatranscriptome | 199 | Y |
| F036102 | Metagenome / Metatranscriptome | 170 | Y |
| F037503 | Metagenome / Metatranscriptome | 168 | Y |
| F044511 | Metagenome / Metatranscriptome | 154 | Y |
| F045770 | Metagenome / Metatranscriptome | 152 | Y |
| F059119 | Metagenome / Metatranscriptome | 134 | Y |
| F084884 | Metagenome / Metatranscriptome | 112 | Y |
| F091052 | Metagenome | 108 | Y |
| F092108 | Metagenome / Metatranscriptome | 107 | Y |
| F094519 | Metagenome | 106 | Y |
| F100426 | Metagenome | 102 | Y |
| F104681 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0316608_1000156 | All Organisms → cellular organisms → Bacteria | 36958 | Open in IMG/M |
| Ga0316608_1002039 | Not Available | 7736 | Open in IMG/M |
| Ga0316608_1006635 | All Organisms → Viruses → Predicted Viral | 3916 | Open in IMG/M |
| Ga0316608_1011603 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 2840 | Open in IMG/M |
| Ga0316608_1016544 | Not Available | 2336 | Open in IMG/M |
| Ga0316608_1026962 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1774 | Open in IMG/M |
| Ga0316608_1060545 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium | 1091 | Open in IMG/M |
| Ga0316608_1070066 | Not Available | 994 | Open in IMG/M |
| Ga0316608_1074232 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 957 | Open in IMG/M |
| Ga0316608_1074624 | All Organisms → cellular organisms → Bacteria | 954 | Open in IMG/M |
| Ga0316608_1077148 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 934 | Open in IMG/M |
| Ga0316608_1082380 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 895 | Open in IMG/M |
| Ga0316608_1096526 | All Organisms → cellular organisms → Bacteria | 808 | Open in IMG/M |
| Ga0316608_1096697 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 807 | Open in IMG/M |
| Ga0316608_1103926 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 769 | Open in IMG/M |
| Ga0316608_1104520 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 766 | Open in IMG/M |
| Ga0316608_1118647 | All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium | 704 | Open in IMG/M |
| Ga0316608_1118831 | Not Available | 704 | Open in IMG/M |
| Ga0316608_1127908 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium GWF2_41_31 | 670 | Open in IMG/M |
| Ga0316608_1133445 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 652 | Open in IMG/M |
| Ga0316608_1141581 | Not Available | 627 | Open in IMG/M |
| Ga0316608_1143933 | Not Available | 620 | Open in IMG/M |
| Ga0316608_1178670 | Not Available | 538 | Open in IMG/M |
| Ga0316608_1195745 | Not Available | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0316608_1000156 | Ga0316608_100015648 | F011397 | MHDFELLKRTYPVSHYERFCDGYDYIKNNSTEAERLSWGINLNDLQKVIKIGEKYIYQVAKEGKEFKIMCLCFKNYEIIRKNIFKLDDE |
| Ga0316608_1000156 | Ga0316608_100015655 | F020177 | MDNIDLNNTYWERIRGFVSESRVDARWKLKENGTDKPLGSLRIVSHPDCPPGQLRAFFNYVTSIRQKSREEKLKTIEDYQIEITELEVYSISEEIKTELLKHEAPFKELQEMFNVEIFE |
| Ga0316608_1002039 | Ga0316608_10020392 | F092108 | MGILRISAKCSDLCWTEYTDAKGKKTESDGYVPSDIGIDEYGDYVVLDIDMKTGQIQNWKPVSDARVIKAQKAS |
| Ga0316608_1006635 | Ga0316608_10066353 | F002371 | MKKKETRGGTRQGSGAKPKYNEETKTVAFRCPISKIDELKIIVKSKLSEWLK |
| Ga0316608_1011603 | Ga0316608_10116031 | F059119 | MLELIILVLTAQLLLSFFGQFAFPGVPHTAGFIYILS |
| Ga0316608_1016544 | Ga0316608_10165441 | F094519 | MNGIKEPEQLTAGVTMIGTSSAGSQTSGIGSIMGSTWADKIIFDAQPDRVLSKYFLEFNDLMGNNDVTIVIPKIGDIDLMGSRTGKIEGISRVFTKFDSADNLTVTLTSADVKLGGCSVSFETASATRVSIVEMAHKQLVRQYLNTIETDANALLEAATISATLGAGSIFGGATVADNAAITSNLATG |
| Ga0316608_1026962 | Ga0316608_10269623 | F025922 | MARNRIIYASQSVWINGEVLYRVQSLGTTTTFTSEDVFELGHLDIIDVVDDVPAVAVTLNTNDFGDVKTLAVLAQVTPSKLEMNASANSTNANLIAGATYLHGVALADFAVTCGNLSGVTLWAPVQDECSIG |
| Ga0316608_1044250 | Ga0316608_10442501 | F084884 | WQKASQQSVHPTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGLPLMKYL |
| Ga0316608_1060545 | Ga0316608_10605453 | F044511 | MLLYSKHRPTKRAPDAGDSGAIPSIFLRLSIFPVGRRPAARPSAGNA |
| Ga0316608_1070066 | Ga0316608_10700661 | F104681 | MKTLTQIKNEIKGICKLYPVMEERIFALNQAGYGNIHYLYVKGSTGLLAINHLKRKQIYRIQIGYTELQKGYPVAWCIDFTSIDVVDEVELPF |
| Ga0316608_1073465 | Ga0316608_10734651 | F044511 | PDAGDSGAIPSLFLRLIIFPVGRRSAARPSAGNANRWQELAVNLSSSFKN |
| Ga0316608_1074232 | Ga0316608_10742321 | F084884 | LGILARFQAFFYALSFSQSDGGTPSNPARVTQTFSPPLA |
| Ga0316608_1074624 | Ga0316608_10746243 | F084884 | LGILARFQAFFYALSFFQSDGVPPPAPARVTQTVRQIFGEIDL |
| Ga0316608_1077148 | Ga0316608_10771481 | F044511 | QNRRLTKRAPDAGDSGAIPSIFLRLIIFPVGRRSAARPSAGNANR |
| Ga0316608_1082380 | Ga0316608_10823803 | F016728 | VCVTRVWVGVDNVWEQEKPEARKMLVNRAESHTSGARFVRQPAR |
| Ga0316608_1096526 | Ga0316608_10965262 | F091052 | MFILSIIGYIMIALLLMSMLAKARPKIKDPMPGKALKNVNMGFPSRLQLHRSSLLALLTGIVFGVLTGWLSLSTAGIVGVFAIITILLPMRYTFTTKGIGLGEGIFYPWSDFSGFAVKGSSLKLDNPSFFGRLTLFIKPAEMNNVLQYVERYVGTK |
| Ga0316608_1096697 | Ga0316608_10966973 | F084884 | PTLGILARFQAFFYASAFSQSDGVPPPAPARVTQTVGRFLA |
| Ga0316608_1103926 | Ga0316608_11039261 | F016728 | LTVCVTRVWAGVDSAWEQEKPEARKMLVNRAESHTSGARFVRPALDL |
| Ga0316608_1104520 | Ga0316608_11045201 | F002525 | TRVWVGVDNVWEQEKPEARKMLVNRAESHTSGARFVGWLCARLAD |
| Ga0316608_1118647 | Ga0316608_11186471 | F037503 | TEVELLIGCGGFNAYQILTNSECRDILPGVRLWVLRSVAERERTQTIS |
| Ga0316608_1118831 | Ga0316608_11188311 | F045770 | MADLTANAPIRILGQEYTEEFTLDNSAAQTVYKGQPMIIDQSEDTVYLRGFVDATVVVATDIFAGIAAEGPVAVATTDTETANKCKLWVFPTIVGFKSTVFTDADLGDTVYMSDSATISATAADNPMLGKLHRVLD |
| Ga0316608_1127908 | Ga0316608_11279081 | F017253 | GSYTQGRIAGDFLSSRKTARAERCTPKTTAAALDG |
| Ga0316608_1133445 | Ga0316608_11334451 | F002525 | VWAGVDSVWEQEKLEARKMLENAAESHTSGARFVGRI |
| Ga0316608_1141581 | Ga0316608_11415812 | F036102 | MERKEMMELFKATAETNTPEGMAAYRAFAAALTTPILQKIELDSIMRQLFTVERLGPGAQAVYPVAEDFEIPVWVLPGLGYVAQNFIEGIGEEVYVPTFSIATSADWKLTY |
| Ga0316608_1143933 | Ga0316608_11439332 | F007838 | RLRQITTLTEQVNTQKESLQAIRDATEKLRKINRKVANYHNLELAIVQVSDSYTRVLNSLKTISDHNCFKPSEYHMISESMMGLLSQTSYAITTLTVVLTDNFSEMSDGERLLNMNQAIKELRENLGVINSAIIEVEILDNQRMQLRTLNYINSVFK |
| Ga0316608_1178670 | Ga0316608_11786701 | F100426 | MARNRIIYASQSVWCNGEVLYRVQSLGSTTTFSSEDINELGHLDIVDIVDDVPKVAVTLNTNEFGDVKTIATLAQIAPTKAEMNTTAVIGNSNLR |
| Ga0316608_1195745 | Ga0316608_11957451 | F022996 | METIERSNLAKMKEDIKNMSQNQKFLKNQRKTEKLVGERVMEPWQATMQHASNREKLRIMYAAYGIMRGKSLSQIENK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |