NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300030717

3300030717: Metatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-3 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300030717 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0135150 | Gp0323848 | Ga0307927
Sample NameMetatranscriptome of soil microbial communities from Risofladan, Vaasa, Finland - UN-3 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size89089381
Sequencing Scaffolds16
Novel Protein Genes18
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus shizuokensis1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Coleofasciculus → environmental samples → uncultured Coleofasciculus sp.1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium B3_Pla1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Risofladan, Vaasa, Finland
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → land → soil
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)N/ADepth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023034Metagenome / Metatranscriptome211Y
F029652Metagenome / Metatranscriptome187Y
F033261Metagenome / Metatranscriptome178Y
F037999Metagenome / Metatranscriptome167Y
F038478Metagenome / Metatranscriptome166Y
F043157Metagenome / Metatranscriptome157Y
F048002Metagenome / Metatranscriptome149Y
F057772Metagenome / Metatranscriptome136Y
F059653Metagenome / Metatranscriptome133Y
F069660Metagenome / Metatranscriptome123Y
F074797Metagenome / Metatranscriptome119Y
F080858Metagenome / Metatranscriptome114Y
F081143Metagenome / Metatranscriptome114Y
F091296Metagenome / Metatranscriptome107Y
F091298Metagenome / Metatranscriptome107Y
F092941Metagenome / Metatranscriptome107N
F104155Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0307927_1000427Not Available4955Open in IMG/M
Ga0307927_1003766Not Available2142Open in IMG/M
Ga0307927_1004870All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1921Open in IMG/M
Ga0307927_1007647All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium1554Open in IMG/M
Ga0307927_1016818All Organisms → Viruses → Predicted Viral1028Open in IMG/M
Ga0307927_1017790All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium997Open in IMG/M
Ga0307927_1021557All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria893Open in IMG/M
Ga0307927_1027313All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi780Open in IMG/M
Ga0307927_1036606Not Available656Open in IMG/M
Ga0307927_1040764Not Available616Open in IMG/M
Ga0307927_1045322All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus shizuokensis580Open in IMG/M
Ga0307927_1051680All Organisms → cellular organisms → Bacteria538Open in IMG/M
Ga0307927_1052429All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Coleofasciculus → environmental samples → uncultured Coleofasciculus sp.534Open in IMG/M
Ga0307927_1055006Not Available519Open in IMG/M
Ga0307927_1055674All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium B3_Pla515Open in IMG/M
Ga0307927_1056861Not Available509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0307927_1000427Ga0307927_10004276F091296VIKRYPHTATLSYFTPGTYTLGIYEEGTLVTIGIVCNAQPNSTKYIIGESGDMIGYNWAIFSPIFAGAGSVPDNAKLTFFNKEHIILQLFEYQKHIEMKC
Ga0307927_1000427Ga0307927_10004277F059653MNNKEALQSQTEYSNDNLLEKLLLDRGLDAGGTYAAANAKDIDLAAASLYFTLAAHPDLREGSFAVKYNGAQLIALAKTILRKYDLETMPTVNGEAIW
Ga0307927_1003766Ga0307927_10037662F023034MNLSFYSTRAYENIRNWTLGQNKPNSNPIKPNFKRAKMNVNSFITKDYRKNDALAVQKNK
Ga0307927_1004230Ga0307927_10042301F037999ERVKLMMTDPAELIDYVRRESHVVWKAVEAFIRRENDEGRDALIEGVAVLPELMSQLGNIPHRVVFIGNQGDNHKENIKKSAEENEHDWMRDVSDQYIGAFAMFVKRMSAYVEQEAKKYGFEYIEMDKELFGDVTEAVVKSLGLSAR
Ga0307927_1004870Ga0307927_10048701F091298MSSAAKLRVASSAQVLEYLSIGEPVQDTRVTGLLDLDPLVVSRWLCGEDLRGIYQPIVVRHSVLDGLDLEGRTFYEIVELVGCHVATAHFKHAYFYSSLLVEDCVFEGDFDGRGMQSDGRVVFHNTVFAGWADFSALSVRGRADLVDVSFPGGTNLLRILANGSHALLGREVNLSGCRFRPADIPAGLEATRCGILPFGERSPGGAERQWGELVGREEGDPVDVVGGPLFASHQSGTVDDDDVRTALVLASGCDVK
Ga0307927_1007647Ga0307927_10076471F057772LASGAEAGAAVLHQDPLDGAAADGAGFASPMSNLKIEMSCAQLALGADVGIHTGAFATDGCPENSADALI
Ga0307927_1016818Ga0307927_10168182F104155MPNEEIKLAQQDTSAEAIGRLQKIYDELYAKVMQLMDEFEERSLLVDSGGGKEVVVYNAEVYCDTDHPGYVYFRIDEEMTKVNNIYVDVYPTDYRSPITL
Ga0307927_1017790Ga0307927_10177901F091298MQVLQYLSIGESIQDTRVTGLLDLDPLVVSRWLCGEDMRGIYQPVVLRHCILDGLDLEGRTCYEMVELVDCTVSTAHFKQAYFYSSLLIEACIFGGDFEGRGIQSDGRVVVHNTIFNGWADFSGIHLRGRADLMNVSFPGGTNLLYVLANGAHKSLGRDIQFNGCRFRAADVPTDLDVARLGITPLGQGDLSGLE
Ga0307927_1021557Ga0307927_10215572F038478ALKGKLQKRRSDLTVELIGFDFGPHKIQIQTAIVKELLEIDEEATTKVFEGLCQSFSDVCLEHHIKVDPVDLFVLVDDELGRGASTKFRDVDDGSFFAEILIPTKDFKVHEYWKYTFLHELGHSWFSTKVSRKDMESGYEDLLIDLVAICTFRKTLPPDKRVYREVRKHRTYFLTQQSKRFLGKELYKQILQDPEGYLRDLRQRI
Ga0307927_1027313Ga0307927_10273132F043157VVGDRLMRILDERFRDCICLNIYDRIDSMQMLGELVMIKRAKKLERRIR
Ga0307927_1036606Ga0307927_10366061F080858MPRFEELRQILGQILQESPNCYWLYDQILNRLREVCPDILEGLEERGGKSYGQGGGEYYGPDSAIAHCLRDWPECVDVQYLSGRDLQIADIKADNDAMVIYRWIG
Ga0307927_1040764Ga0307927_10407641F074797MNESEPPMRCRENELSVKTTGTLTLGEECSGYLFTGYMADVIKEA
Ga0307927_1045322Ga0307927_10453221F069660MTAILKLLGLIGGIVPIILTLIVAFETPGFGAEKKKVILDAINLFYDKVAEGNVMPITKEKLSGIASGFIDIVVAFFNLVGWFKHNSPTVSS
Ga0307927_1051680Ga0307927_10516801F033261QEFAHRIGKHDLYLDILPPGYVLKSWRDEQGQLHREVEYDQTAFFLSAWLRCLVFNLMGRFAEAMGGQYATMWAGTLLRKFIRRPATLYLVDKELHVVFDPFPGQDELQPLLDKLNAKRTALPWLNNLVVQFSIAQNEPVHPLATPEKRKRLFGDG
Ga0307927_1052429Ga0307927_10524291F081143PDDGKLCAVSRTERIATRGGRSSGQMTPRRTTYLDSKERGDNSMFVKRGTAEDVYGVALQRLSDMAKAGLLESQCPVVEWHTHW
Ga0307927_1055006Ga0307927_10550062F092941MLGEILLKMVSVLTPDDIRQMKSAGCGDEVRAILGDLDKLAVSWHDGEYGVMSLVDVQIWANVRSSLDELRAALREG
Ga0307927_1055674Ga0307927_10556741F029652MKLGIGGAIALGLGIWALMSWWWFVVEIIQSLVALGLVIGGVLALAIAARRMYRAKQTE
Ga0307927_1056861Ga0307927_10568611F048002VGAAVRDALSDLHPMADLLASCPGMTKEHVYYLEQRGYIRPIKQRHGKIERNLYTTEQLGLVTAMWGHRQEGFSPREAYQRALREQSRGQLSMWPHEGAEA
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