NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029895

3300029895: Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-C3a



Overview

Basic Information
IMG/M Taxon OID3300029895 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133355 | Gp0289628 | Ga0247043
Sample NameCryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-C3a
Sequencing StatusPermanent Draft
Sequencing CenterDMAC, Technical University of Denmark
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size211196280
Sequencing Scaffolds16
Novel Protein Genes17
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae1
Not Available5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA71

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCryconite Microbial Communities Around The Greenland Ice Sheet
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → cryoconite hole → cryoconite deposit
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationGreenland: Tasiilaq
CoordinatesLat. (o)65.38Long. (o)-38.53Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002118Metagenome / Metatranscriptome591Y
F002238Metagenome / Metatranscriptome579Y
F040130Metagenome / Metatranscriptome162Y
F045483Metagenome152N
F052031Metagenome / Metatranscriptome143Y
F070201Metagenome / Metatranscriptome123Y
F071607Metagenome / Metatranscriptome122Y
F076649Metagenome / Metatranscriptome118Y
F083559Metagenome112Y
F085031Metagenome111Y
F092368Metagenome / Metatranscriptome107Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0247043_1001984All Organisms → cellular organisms → Bacteria8467Open in IMG/M
Ga0247043_1010406All Organisms → cellular organisms → Bacteria3420Open in IMG/M
Ga0247043_1010806All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3327Open in IMG/M
Ga0247043_1012916All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae2912Open in IMG/M
Ga0247043_1015514Not Available2534Open in IMG/M
Ga0247043_1015990All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2473Open in IMG/M
Ga0247043_1016353All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium2425Open in IMG/M
Ga0247043_1018446All Organisms → cellular organisms → Bacteria2202Open in IMG/M
Ga0247043_1019010All Organisms → cellular organisms → Bacteria2145Open in IMG/M
Ga0247043_1035918All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1206Open in IMG/M
Ga0247043_1048078Not Available907Open in IMG/M
Ga0247043_1054209All Organisms → cellular organisms → Eukaryota808Open in IMG/M
Ga0247043_1067470Not Available661Open in IMG/M
Ga0247043_1072718Not Available618Open in IMG/M
Ga0247043_1084055All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7545Open in IMG/M
Ga0247043_1086854Not Available530Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0247043_1001984Ga0247043_10019849F083559MGAATLLNFESTPDNITKQEIEPALRRKKVRCMYDCAAMDSLQHHSSIPSLINLRVLPHTVHEFGVEARKAGKSWEAAFNGPIQSWADAGTGEVIYGVTVRLSRIKDPFTRELYSTNILFYLPEEAMHGMHNVYDMARKFPFTRIRGPRTSPPQCPPRAGQLWYDANPEGVIMEDVRQSPATLPDGRPGFFVTGQGYRGKVVLPDGLFIHDVGVYGGYLDPQERPAHLELQHLFGGVEFVSGKTNTEEDLFLTELGEDIWVKGIVGNAVEELHVESYKNSVRLPSPFKDKVLIGARSMSETKLLPYFESADPSGLRGYGLRGFVDGLPPAIGPSVWERVNRVGLGSNFIPCPELGGHIGLIHVVLERNNPDHPETHDPVYPDIEEQYEGWVVWLDFNDTGAPHVKSCLRALTPDDVPRCYQGAGELFDTKRVAFPISLYRVGDNLRVGYGWGDRALFQAEFDYQTVVRQLAA
Ga0247043_1010406Ga0247043_10104062F083559MNTAVSCLDTPNYSTDLMAIIPHTVREFGVEARKEGRAWEAAFNGPIQSWLDAETEQMTYGVTVRLSRLKDPVTRELFSTNLLFYFAEAEMHGIHNVYDMARTLPFTRIRGPRTPVPVCPARSGRLWYDANPEGVIMEDLRLTPTTLPEGGTGFFVTGQGYRGKVMLPDGRFIHDVGVYGGYLDPAERPKQLELQHLFGGIEFGAMTDDRLLTELGDGVWVRGIAESAEGSPHVESYKNSVRLPSVDSHRTVIGARSMSETKQIAYFESRSADGLSGFRLGGVIDGLHRALGLQIWDRVHRVGLGSNFVECTELGGYIGLIHVVLEKNNPEFPETLDPVHPGIDEQYEGWVVWLTLDEDGVPSIKACVRAITPDDVPTEYQGRGELFDTKRVAFPISLYRIGNALQVGYGWGDRALFQAEFEYGVVIDQLFRRSLR
Ga0247043_1010806Ga0247043_10108063F045483MAKPRRLFSGLSVLGLSLLVLAGCAVPGGYDVNSLRLQPEAALVYPGSTDVHPNYYNGSPGNYVSKGAVASIGNLATTIHTQLEVLAFFSKTVTADGWTQNGKSDQETTPEGLPASTISWGKQSLHLSYSVEAWTEGETTKYWTRISSDE
Ga0247043_1012916Ga0247043_10129162F085031MSESEAPLRQQMAEAMDAIRQQLDVLRAGPSIGGPLDNRSVIADLEAEFLALKEARANLGPQER
Ga0247043_1015514Ga0247043_10155141F083559MNTAATTTEFSSPISEPSYDDFHVMEVIPHTIHEFGVEARKAGKSWEAAFNGPIQSFEEPVTGQSAYAVTVRLSRLKDPVTRELFSTNLLFYMSHEEMSGMHNVYDMARKFPFTRIRGPRTLVPHCPPRDGRLWYDANPEGVIMEDLRLTPTTLPSGRLGFFVTGQGYRGKVTSPDGRFTHDVGVYGGYLDPLERPGQLELQHLFGGIEFAPYRAGGEENPLLTELGEDVWVKGIGENTLGLPSVSSYKNSVRLPSQDASQILIGARSMSETKQIAWFESRSADGLSGFRLGGVIDGLHRALGLQVWDRVHRVGLGSNFVDCPELGGFIGLIHIVMEKNNPAFPETLDPIHPGITEQYEGWLVWMTFDEKGVPMIKACVRAITPDDVPLGYCGAGELFDTKRVAFPMSLYRRGNALQAGYGWGDRALFQAEFDYETVTARLSKHCRN
Ga0247043_1015990Ga0247043_10159903F002238MARMLDDETPEFRRGWEAAVLAARYWHEDKSKQTLVLSRRSRFPKMLERDAEVHKYSAGMMATLMPEDP
Ga0247043_1016353Ga0247043_10163532F045483MATMRRLFSALSVLGLSLLVLTGCVVPGGYDVNTLHVQPEAGLVYPGSTGVHTNDYNGSPGNYVSKGAVAATGKSGTTTHTQLEVLAYFSKTLAADGWKQTQEEVRAITPEGLPAHWIAWDKPKLHLSYLVEVWTVGEATKCYTQFGSNE
Ga0247043_1018446Ga0247043_10184461F045483MAKPRRLFSGLSVLGLSLFVLTGCAVPGGYDVNSLHLLPEAALVYPGSADVHTNDYGGSPGNYVSKGAVAVTGKSATTVHTQLEVLAYFSKTLAAGGWTQTGADDTATTPEGFRAKGISWVKNSLHLSYLVEVWTVGETTQYLTQLNANE
Ga0247043_1019010Ga0247043_10190102F083559MNDCAVSDALTHPPSSRPPRPALVDLHILPHTIHEFGVEARKAGKSWEAAFNGPIQSWEDPETQQATYGVTVRLSRIKDPFTRELYSTNILFYLPEDAMHGMHNVYDMAQRFPFTRIRGPRTAPPLCPPRAGMLWYDANPEGVIMEDVRQSPAMLPDGRPGFFVTGQGYRGKVVLPDGLFIHDVGVYGGYLDPLERPAQLELQHLFGGIEFMPGKTGTQEDLFLTELGDGVWVKGIVGNAVDELHVESYKNSVRLPCPHAGKFLIGARSMSETKLLPYFESRDPNGLGSYALSGFVDCLPKAIGPDVWERVHRVGLGSNFIPSPEIGGHIGLIHVVLERNNPDYPETHDPSYPKIEEQYEGWVVWLDFDESGTPHVKSCLRALTPDDVPRCYQGAGELFDTKRVAFPISLYRIGDNLRVGYGWGDRALFQAEYDYQTVVRHLAA
Ga0247043_1035918Ga0247043_10359182F040130MAGFLKRALAVVAGVALGILIVAGAGPWRELFRQPDAAPTQPIQRERAPDTRA
Ga0247043_1048078Ga0247043_10480781F045483MAKPRRLFFGLSVLGISLLLLTGCVVPGGYDVNTLHLLPESGLIYPGSTDVHTNNYGGSPGNYVSKGAVAVTGKTATTIHTQLEVLAYFSQTLAAGGWTQTRADDTATTPEGFRAKDISWVKNSLHLSYLVRTWTVGETTQYFTLLSANE
Ga0247043_1054209Ga0247043_10542091F071607SKLGVRSHNLMLACYMSHASDWLLAPPIPGLGLSLQSDCFRTALKFRLSMPLFDKPFPCPAVSTGSGAVCNAQMDVFGDHALCCHNTSSLGFRHNNIRDILGHSARAAGLAAVAIEKKNQIDGSNARPGDITVQQYHRGFASTAFDITITHPLQKKFIERWRRPVWWHRRLMTES
Ga0247043_1054209Ga0247043_10542092F092368VVAQEAHDRKLKKSFEVCQKGGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACDRAL
Ga0247043_1067470Ga0247043_10674701F076649APIALPRPPSAFATARASSQATGDYFHDFGELIVRVRSVRWIEEICSETFPASTETNRHAYEVWLVDHGAFVDEVEGQFLVIEKYWGDASEQARKEGLTIDQLRAKVDANRPALREDFHARGMRSFQARCDAYPEILLSPQLDLEKSQAELVQSVRLGPR
Ga0247043_1072718Ga0247043_10727182F070201MRTMPLQFLTWGTITAAVGSAVWLSSTDQGAVFCSVGYRATSRAMGVDIALPLEPTRAGHLATKPGSSAAKQLQAAAN
Ga0247043_1084055Ga0247043_10840552F002118MTELVVADKASEWRKLKALVLDSVSSPITKRVYNLGLDEFISWYTQEPRAGFTKALVS
Ga0247043_1086854Ga0247043_10868542F052031MTLDLRATCPATTEFHAEIVQFVFRSAVSSGLLKKARAMLDAAPPELAESFEQAVRTAGLAS
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Biomedical Sciences Research Center "Alexander Fleming"
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