NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F092368

Metagenome / Metatranscriptome Family F092368

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F092368
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 100 residues
Representative Sequence MEEAGVVAEEAHDKKLQKSLAVCEKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACGRAL
Number of Associated Samples 88
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Eukaryota
% of genes with valid RBS motifs 28.97 %
% of genes near scaffold ends (potentially truncated) 52.34 %
% of genes from short scaffolds (< 2000 bps) 98.13 %
Associated GOLD sequencing projects 85
AlphaFold2 3D model prediction Yes
3D model pTM-score0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Eukaryota (96.262 % of family members)
NCBI Taxonomy ID 2759
Taxonomy All Organisms → cellular organisms → Eukaryota

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(10.280 % of family members)
Environment Ontology (ENVO) Unclassified
(35.514 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(49.533 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 60.16%    β-sheet: 0.00%    Coil/Unstructured: 39.84%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.61
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF00078RVT_1 0.93
PF01807zf-CHC2 0.93
PF00487FA_desaturase 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0358DNA primase (bacterial type)Replication, recombination and repair [L] 0.93
COG1398Fatty-acid desaturaseLipid transport and metabolism [I] 0.93
COG3239Fatty acid desaturaseLipid transport and metabolism [I] 0.93

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms98.13 %
RhodophytaphylumRhodophyta1.87 %
UnclassifiedrootN/A0.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000364|INPhiseqgaiiFebDRAFT_105529950All Organisms → cellular organisms → Eukaryota632Open in IMG/M
3300002090|JGI24806J26614_1003340All Organisms → cellular organisms → Eukaryota5015Open in IMG/M
3300002090|JGI24806J26614_1018600All Organisms → cellular organisms → Eukaryota762Open in IMG/M
3300002090|JGI24806J26614_1022818All Organisms → cellular organisms → Eukaryota633Open in IMG/M
3300004114|Ga0062593_100386490All Organisms → cellular organisms → Eukaryota1243Open in IMG/M
3300005329|Ga0070683_101848428All Organisms → cellular organisms → Eukaryota580Open in IMG/M
3300005330|Ga0070690_101473929All Organisms → cellular organisms → Eukaryota549Open in IMG/M
3300005337|Ga0070682_101308033All Organisms → cellular organisms → Eukaryota616Open in IMG/M
3300005338|Ga0068868_100421184All Organisms → cellular organisms → Eukaryota1156Open in IMG/M
3300005366|Ga0070659_101567695All Organisms → cellular organisms → Eukaryota588Open in IMG/M
3300005434|Ga0070709_10569337All Organisms → cellular organisms → Eukaryota869Open in IMG/M
3300005434|Ga0070709_10820932All Organisms → cellular organisms → Eukaryota731Open in IMG/M
3300005434|Ga0070709_11426998All Organisms → cellular organisms → Eukaryota561Open in IMG/M
3300005435|Ga0070714_100848731All Organisms → cellular organisms → Eukaryota886Open in IMG/M
3300005436|Ga0070713_101481197All Organisms → cellular organisms → Eukaryota658Open in IMG/M
3300005440|Ga0070705_101424248All Organisms → cellular organisms → Eukaryota578Open in IMG/M
3300005441|Ga0070700_100657705All Organisms → cellular organisms → Eukaryota828Open in IMG/M
3300005538|Ga0070731_10600790All Organisms → cellular organisms → Eukaryota732Open in IMG/M
3300005564|Ga0070664_102348186All Organisms → cellular organisms → Eukaryota506Open in IMG/M
3300006178|Ga0075367_11089825All Organisms → cellular organisms → Eukaryota511Open in IMG/M
3300006606|Ga0074062_12584003All Organisms → cellular organisms → Eukaryota500Open in IMG/M
3300006755|Ga0079222_10540333All Organisms → cellular organisms → Eukaryota868Open in IMG/M
3300006755|Ga0079222_12657839All Organisms → cellular organisms → Eukaryota504Open in IMG/M
3300006806|Ga0079220_11102816All Organisms → cellular organisms → Eukaryota643Open in IMG/M
3300006853|Ga0075420_100397552All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta1192Open in IMG/M
3300006853|Ga0075420_100733376All Organisms → cellular organisms → Eukaryota852Open in IMG/M
3300006894|Ga0079215_10627181All Organisms → cellular organisms → Eukaryota708Open in IMG/M
3300006918|Ga0079216_10731463All Organisms → cellular organisms → Eukaryota712Open in IMG/M
3300007004|Ga0079218_11708273All Organisms → cellular organisms → Eukaryota698Open in IMG/M
3300007004|Ga0079218_12407165All Organisms → cellular organisms → Eukaryota619Open in IMG/M
3300009101|Ga0105247_11106061All Organisms → cellular organisms → Eukaryota625Open in IMG/M
3300009156|Ga0111538_10741485All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Candidatus Nephrothrix → unclassified Candidatus Nephrothrix → Candidatus Nephrothrix sp. EaCA1244Open in IMG/M
3300009156|Ga0111538_12210673All Organisms → cellular organisms → Eukaryota691Open in IMG/M
3300009174|Ga0105241_12248178All Organisms → cellular organisms → Eukaryota542Open in IMG/M
3300009545|Ga0105237_10882328All Organisms → cellular organisms → Eukaryota901Open in IMG/M
3300009553|Ga0105249_11401556All Organisms → cellular organisms → Eukaryota771Open in IMG/M
3300009610|Ga0105340_1053062All Organisms → cellular organisms → Eukaryota1582Open in IMG/M
3300010375|Ga0105239_12926046All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Porifera → Demospongiae → Heteroscleromorpha → Haplosclerida → Niphatidae → Amphimedon → Amphimedon queenslandica557Open in IMG/M
3300010375|Ga0105239_13606098All Organisms → cellular organisms → Eukaryota503Open in IMG/M
3300010396|Ga0134126_10093384All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta3706Open in IMG/M
3300010396|Ga0134126_10845332Rhodophyta → Bangiophyceae → Porphyridiales → Porphyridiaceae → Porphyridium → Porphyridium purpureum1032Open in IMG/M
3300010396|Ga0134126_11994037All Organisms → cellular organisms → Eukaryota635Open in IMG/M
3300010397|Ga0134124_12487700All Organisms → cellular organisms → Eukaryota560Open in IMG/M
3300010399|Ga0134127_12240239All Organisms → cellular organisms → Eukaryota625Open in IMG/M
3300010400|Ga0134122_13317939All Organisms → cellular organisms → Eukaryota506Open in IMG/M
3300011119|Ga0105246_11061459All Organisms → cellular organisms → Eukaryota737Open in IMG/M
3300011398|Ga0137348_1062189All Organisms → cellular organisms → Eukaryota643Open in IMG/M
3300012008|Ga0120174_1054421All Organisms → cellular organisms → Eukaryota1093Open in IMG/M
3300012187|Ga0136622_10228594All Organisms → cellular organisms → Eukaryota782Open in IMG/M
3300012679|Ga0136616_10350272All Organisms → cellular organisms → Eukaryota672Open in IMG/M
3300012885|Ga0157287_1088617All Organisms → cellular organisms → Eukaryota556Open in IMG/M
3300012898|Ga0157293_10144424All Organisms → cellular organisms → Eukaryota665Open in IMG/M
3300012902|Ga0157291_10310375All Organisms → cellular organisms → Eukaryota551Open in IMG/M
3300012907|Ga0157283_10050268All Organisms → cellular organisms → Eukaryota952Open in IMG/M
3300012909|Ga0157290_10098530All Organisms → cellular organisms → Eukaryota858Open in IMG/M
3300013102|Ga0157371_10798433All Organisms → cellular organisms → Eukaryota711Open in IMG/M
3300013104|Ga0157370_11029209Rhodophyta → Bangiophyceae → Porphyridiales → Porphyridiaceae → Porphyridium → Porphyridium purpureum745Open in IMG/M
3300013296|Ga0157374_12067316All Organisms → cellular organisms → Eukaryota596Open in IMG/M
3300013297|Ga0157378_12928155All Organisms → cellular organisms → Eukaryota529Open in IMG/M
3300013306|Ga0163162_11419779All Organisms → cellular organisms → Eukaryota790Open in IMG/M
3300013307|Ga0157372_12597932All Organisms → cellular organisms → Eukaryota581Open in IMG/M
3300013308|Ga0157375_11569489All Organisms → cellular organisms → Eukaryota778Open in IMG/M
3300013308|Ga0157375_12455211All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Porifera → Demospongiae → Heteroscleromorpha → Haplosclerida → Niphatidae → Amphimedon → Amphimedon queenslandica622Open in IMG/M
3300013308|Ga0157375_13413555All Organisms → cellular organisms → Eukaryota529Open in IMG/M
3300014326|Ga0157380_11632796All Organisms → cellular organisms → Eukaryota701Open in IMG/M
3300014497|Ga0182008_10685532All Organisms → cellular organisms → Eukaryota584Open in IMG/M
3300014969|Ga0157376_11620486All Organisms → cellular organisms → Eukaryota682Open in IMG/M
3300015076|Ga0167656_1040969All Organisms → cellular organisms → Eukaryota508Open in IMG/M
3300016387|Ga0182040_11762221All Organisms → cellular organisms → Eukaryota530Open in IMG/M
3300017792|Ga0163161_10140151All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium1831Open in IMG/M
3300017792|Ga0163161_11520607All Organisms → cellular organisms → Eukaryota588Open in IMG/M
3300018073|Ga0184624_10304285All Organisms → cellular organisms → Eukaryota714Open in IMG/M
3300018074|Ga0184640_10169119All Organisms → cellular organisms → Eukaryota980Open in IMG/M
3300018433|Ga0066667_10409260All Organisms → cellular organisms → Eukaryota1098Open in IMG/M
3300018465|Ga0190269_11136572All Organisms → cellular organisms → Eukaryota606Open in IMG/M
3300018466|Ga0190268_11857176All Organisms → cellular organisms → Eukaryota546Open in IMG/M
3300018481|Ga0190271_12057849All Organisms → cellular organisms → Eukaryota679Open in IMG/M
3300018481|Ga0190271_12095075All Organisms → cellular organisms → Eukaryota673Open in IMG/M
3300019362|Ga0173479_10630428All Organisms → cellular organisms → Eukaryota566Open in IMG/M
3300020582|Ga0210395_10491258All Organisms → cellular organisms → Eukaryota924Open in IMG/M
3300021168|Ga0210406_10308385All Organisms → cellular organisms → Eukaryota1286Open in IMG/M
3300021403|Ga0210397_11574087All Organisms → cellular organisms → Eukaryota510Open in IMG/M
3300022903|Ga0247774_1179544All Organisms → cellular organisms → Eukaryota505Open in IMG/M
3300023265|Ga0247780_1224209All Organisms → cellular organisms → Eukaryota512Open in IMG/M
3300025898|Ga0207692_10191175All Organisms → cellular organisms → Eukaryota1198Open in IMG/M
3300025901|Ga0207688_10524657All Organisms → cellular organisms → Eukaryota743Open in IMG/M
3300025906|Ga0207699_11348453All Organisms → cellular organisms → Eukaryota528Open in IMG/M
3300025907|Ga0207645_10623143All Organisms → cellular organisms → Eukaryota733Open in IMG/M
3300025929|Ga0207664_10568589All Organisms → cellular organisms → Eukaryota1017Open in IMG/M
3300025929|Ga0207664_11764945All Organisms → cellular organisms → Eukaryota541Open in IMG/M
3300025931|Ga0207644_11458310All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia575Open in IMG/M
3300025937|Ga0207669_11352947All Organisms → cellular organisms → Eukaryota606Open in IMG/M
3300025972|Ga0207668_11035188All Organisms → cellular organisms → Eukaryota735Open in IMG/M
3300026067|Ga0207678_11231751All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Porifera → Demospongiae → Heteroscleromorpha → Haplosclerida → Niphatidae → Amphimedon → Amphimedon queenslandica662Open in IMG/M
3300027902|Ga0209048_10377932All Organisms → cellular organisms → Eukaryota976Open in IMG/M
3300028792|Ga0307504_10457793All Organisms → cellular organisms → Eukaryota513Open in IMG/M
3300028857|Ga0302289_1111296All Organisms → cellular organisms → Eukaryota630Open in IMG/M
3300029895|Ga0247043_1054209All Organisms → cellular organisms → Eukaryota808Open in IMG/M
3300031086|Ga0074002_14315020All Organisms → cellular organisms → Eukaryota540Open in IMG/M
3300031231|Ga0170824_105053603All Organisms → cellular organisms → Eukaryota → Opisthokonta605Open in IMG/M
3300031231|Ga0170824_107548883All Organisms → cellular organisms → Eukaryota520Open in IMG/M
3300031231|Ga0170824_120863927All Organisms → cellular organisms → Eukaryota529Open in IMG/M
3300031231|Ga0170824_126036826All Organisms → cellular organisms → Eukaryota677Open in IMG/M
3300031939|Ga0308174_11919038All Organisms → cellular organisms → Eukaryota510Open in IMG/M
3300032001|Ga0306922_11551218All Organisms → cellular organisms → Eukaryota661Open in IMG/M
3300032008|Ga0318562_10544511All Organisms → cellular organisms → Eukaryota672Open in IMG/M
3300034818|Ga0373950_0170667All Organisms → cellular organisms → Eukaryota507Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.28%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere7.48%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil6.54%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil5.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere5.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.67%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.74%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil3.74%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.74%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere3.74%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil2.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.80%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.80%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.80%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand1.87%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.87%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.87%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.87%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.87%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.93%
CryconiteEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite0.93%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.93%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.93%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.93%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.93%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.93%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.93%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.93%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.93%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300002090Soil microbial communities from Manhattan, Kansas, USA - Sample 200um MDAEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300006178Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2Host-AssociatedOpen in IMG/M
3300006606Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009610Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011398Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT600_2EnvironmentalOpen in IMG/M
3300012008Permafrost microbial communities from Nunavut, Canada - A39_80cm_12MEnvironmentalOpen in IMG/M
3300012187Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ448 (21.06)EnvironmentalOpen in IMG/M
3300012679Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ299 (21.06)EnvironmentalOpen in IMG/M
3300012885Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1EnvironmentalOpen in IMG/M
3300012898Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1EnvironmentalOpen in IMG/M
3300012902Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1EnvironmentalOpen in IMG/M
3300012907Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1EnvironmentalOpen in IMG/M
3300012909Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1EnvironmentalOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013104Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaGHost-AssociatedOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014497Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015076Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6a, vegetation/snow interface)EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018074Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018465Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 ISEnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300022903Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L001-104B-6EnvironmentalOpen in IMG/M
3300023265Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L079-202R-5EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300027902Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028857Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_2EnvironmentalOpen in IMG/M
3300029895Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-C3aEnvironmentalOpen in IMG/M
3300031086Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Litter GP-2 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300034818Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10552995013300000364SoilVVAEEAXDRKLQKSLAICEKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQLSCCLQRHLAQAVIDRRLELECGRAL*
JGI24806J26614_100334023300002090SoilMTEAGVAAEEAHNRKLLKSLGVCQREGIHFVPLAWEWTGGATHTVHETIRKWNEMKSARSGYPAYLIRRNLYCQISVSLQSSLAQAVIDRRVEFSCERVL*
JGI24806J26614_101860023300002090SoilVTEAGVVAEEAHDRKLLKSLGVCQREGIHFVPLAWESTGGANHTVHETIRKWTEMESARSGDPAYLIRRNLYSQISVSLQRSLAQAVIDRRVEFSCERVL*
JGI24806J26614_102281813300002090SoilMVAEDAHDRKLQKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACDRAL*
Ga0062593_10038649013300004114SoilMEEAGVAAQDAHDKKLQKSLALCDKEGLHFVPLAWESLGGATETVHDTLGRWTELEGARGGYPTALIRRNLYSQVSCCLARHLAQAVIDRQPELECDRAL*
Ga0070683_10184842823300005329Corn RhizosphereLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACGRAL*
Ga0070690_10147392913300005330Switchgrass RhizosphereLQKSLALCEKEGIHFVPLAWESTGGATELHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQSVIDRRLELACDRAL*
Ga0070682_10130803323300005337Corn RhizosphereRKVIKSLQECKDEGIHFVPLAWESIGGATETVHETIRKWTELEGARGGYPAYLIRRNLYSQISCCLQRHLAQAVIDRQLELACDHVL*
Ga0068868_10042118413300005338Miscanthus RhizosphereMVADEAHDRKLQKSLEVCQKEGIHFVPLAWESTVGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELP
Ga0070659_10156769513300005366Corn RhizosphereKKFIEIAMEEAGVVAEEAHDRKLLKSLEVCQKEGIDFVPLAWESTGGATETVHETVRKWTELEGARGGYPAFLIRRNLYAQISCCLQRHLAQAVIDRRLELACGRAL*
Ga0070709_1056933723300005434Corn, Switchgrass And Miscanthus RhizosphereMEEAGVVAEEAHDRKLQKSLAMCEKEGIHFVPLAWESTGGATETVHETVRKWSELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELSCDRVL*
Ga0070709_1082093213300005434Corn, Switchgrass And Miscanthus RhizosphereTISHPLQLKYIEVAMEEAGVAAQDAHDKKLQKSLAICDKEGLHFVPLAWESLGGATETVHDTLGRWTDLEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELSCDRVL*
Ga0070709_1142699813300005434Corn, Switchgrass And Miscanthus RhizosphereHPLQQKYKEIAMEEAGMVAEEAHDRKLLKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYMIRRNLYSQISCCLQRHLAQAVIDRRLEQACDRVL*
Ga0070714_10084873113300005435Agricultural SoilPLQKKFIEIAMEEAGVVAEEAHDRKLLKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACGRAL*
Ga0070713_10148119723300005436Corn, Switchgrass And Miscanthus RhizosphereIEIAMEEAGVVAEEAHDRKLQKSLAMCEKEGIHFVPLAWESTGGATETVHETVRKWSELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELSCDRVL*
Ga0070705_10142424813300005440Corn, Switchgrass And Miscanthus RhizosphereVAAQDAHDKKLQKSLEICEKEGIHFVLLAWESLGGATETVHDTLNRWTELEGARGGYPTELIRRNLYSQVSCCLARHLAQAVIDRQPELECDRVL*
Ga0070700_10065770513300005441Corn, Switchgrass And Miscanthus RhizosphereMVAEEAHDRKLLKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYMIRRNLYSQISCCLQRHLAQAVIDRRLEQACDRVL*
Ga0070731_1060079013300005538Surface SoilMQVAMSEAGVAAQDAHDRKHLKALEVCKEEGLHFVPLAWESTGGATETVHETIRKWTNLEAARGGYPVGIIRQNLYAQVSCSAEPLGASYD*
Ga0070664_10234818613300005564Corn RhizosphereLQKKHIDVATDEAGVAAQAAHDRKLQKSLEDCKKEGLHFVPLAWESTGGATDTVHEIIRKWTDLESDRCGYPVDVIRQNLYSQVSCC
Ga0075367_1108982513300006178Populus EndosphereVLQLRKLHDRKLLKSLELCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACDRVL*
Ga0074062_1258400313300006606SoilHPLQKKYIEVAMEEAGVVAQEAHDRKLLKSLEVCKAEGIQFIPLAWESLGGATETVHTTVRKWSDLEAARGGYSATLIRRNLYAQLSCCLQRHLAQAVIDRRPELACDRGL*
Ga0079222_1054033323300006755Agricultural SoilVCQREGIHFVPLAWEATGGATETVHETIRKWTEMESARGGYPAKFIRRNLYSQISVSLHLAQAVIDRRVELSCEHML*
Ga0079222_1265783923300006755Agricultural SoilPLQKKYIEVAMEEGGVAAEDAHDRKLLKSLEVCEREGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCFQRHLAQAVIDRRVEAGCDRLL*
Ga0079220_1110281623300006806Agricultural SoilKEIAMEEAGMVAEEAHDRKLLKSLEVCQKEGIHFVPLAWESTAPDTVHETVCKWTELVGARGGYPAYMIRRNLYSQISCCLQRHLAQAVIDRRLEQACDRVL*
Ga0075420_10039755223300006853Populus RhizosphereMQKSKAVCEKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQLSCCLQRHLAQAVIDRRLEQACGRAL*
Ga0075420_10073337623300006853Populus RhizosphereEKEGIHFVPLAWESTGGATETVHETIRKWTELEGARGGYPAYLIRRNLYAQLSCCLQRHLAQAVIDRRLELECGRAL*
Ga0079215_1062718113300006894Agricultural SoilMEEAGLVAKEAHHKKLKKSLEVCEQEGIHFVPLAWESTGGATETVHETIRKWTELEGSRGGYPAHHIRRNLYAQISCCLQRHLAQAVIDRRMELACGRAL*
Ga0079216_1073146323300006918Agricultural SoilVCQREGIHFVPLAWEATGGATETVHETIRKWTQMESARTGYPAYLIRRNLYSQISVSLQRSLAQAVIDRRLEFSCEHVL
Ga0079218_1170827323300007004Agricultural SoilTHPLQKKFLEVAMEEAGVAAQDEQAAKVPCDLRQRRDHFVPLAWESLGGATETVHDTLGRWTELEGARGGYPTKLIRRNLYAQVSCCLARHLAQAVIDRQPELECERAL*
Ga0079218_1240716513300007004Agricultural SoilVVAEEAHDRELQKSLAVCLKEGIHFVPLAWESTGGATDTVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACDHTL*
Ga0105247_1110606113300009101Switchgrass RhizosphereMEEAGVAAQDAHDKKLQKSLEICEKEGIHFVPLAWESLGGATETVHDTLNRWTELEGARGGYPTELIRRNLYSQVSCCLARHLAQAVIDRQPELECDRVL*
Ga0111538_1074148523300009156Populus RhizosphereMLCFMLCFMHVSVTAEDAHDKKLLKSLEVCEKEGIHFVPLAWETTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVVDRRLEASCDRVL*
Ga0111538_1221067323300009156Populus RhizosphereVAAQDAHDKLQKSLAVCGREGLHFVPLAWESLGGATETVHDTLGRWTEMEGARGGYPTALIRRNLYSQLSCCLARHLAQAVIDRHPELGCERVL*
Ga0105241_1224817813300009174Corn RhizosphereRERERKHIDVATDEAGVAAQAAHDRKLQKSLEDCKKEGLHFVPLAWESTGGATDTVHEIIRKWTDLESDRCGYPVDVIRQNLYSQVSCCLQAHLAQAVLDRLPERPCSRAL*
Ga0105237_1088232823300009545Corn RhizosphereVAAQAAHDRKLQKSLEDCKKEGLHFVPLAWESTGGATDTVHEIIRKWTDLESDRCGYPVDVIRQNLYSQVSCCLQAHLAQAVLDRLPERPCSRAL*
Ga0105249_1140155623300009553Switchgrass RhizosphereLQKNLIDVANGEAGVAAQAAHDNKLKHALPYCQEEGLQFVPLAWESTGGATDTVHKTIGKWTALEANRGGYPIELIRYMLYAQISCCLQRHLAQAVIDRQPERPCARAY*
Ga0105340_105306223300009610SoilLEIAMEEAGIVAEEAHDRKLQKSLEVCKEEGIHFVPLAWESTGGTTETVHETIRKWTQLEGARGGYPAHLIRRNLYAQISCCLQRHLAQSVIDRRLELACERAL*
Ga0105239_1292604613300010375Corn RhizosphereGFASSAFDITITHPLQKKFIEIAMEEAGVVAEEAHDRKLLKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACGRVL*
Ga0105239_1360609823300010375Corn RhizosphereLDIAMVEACVVAKEAYDRKLLKSLGVCQREDIHFVPLAWESTGGATQTVHETIRKWTETESARSGYPAYLIRRNLYSQVSVSLQRSLAQAVIDRRVEFDCERVL*
Ga0134126_1009338423300010396Terrestrial SoilMAEAGVVAEEAHDRKLLKSLGVCQREGIHFVPLAWESTGGATQTVHETIRKWTEMESARSGYPAYLIRRNLYSQVSVSLQRSLAQAVIDRRVEFDCERVL*
Ga0134126_1084533223300010396Terrestrial SoilLQTKFIEIAMGEAGVVAEEAHDRKLQKSLAVCVKEGIHFVPLAWESTGGATDTVHETIRKWSELEGARGGYPAYLIRRNLYAQISCCLQRHLAQALIDRRLELACDRAL*
Ga0134126_1199403713300010396Terrestrial SoilVAMDEAGVAAEEAHDNKLKKHLEDCKKEGLQFVPLAWESTGGATATVHKTLGKWTGLESERGGYPLAIIRQNLYAQVSCCLQRHLAQCVLDRQPERGCSFAL*
Ga0134124_1248770023300010397Terrestrial SoilYLTVAMEEPGVVAQEAHDRKLQKSLALCREEGIHFVPLAWETLGGATDTVHSTVRKWTDLEASRGGYSASVIRRNLYAQLSCCLQRHLAQAVIDRRLELSSDLIL*
Ga0134127_1224023923300010399Terrestrial SoilVAAQDAHDKKLQKSLALCDKEGLHFVPLAWESLGGATETVHDTLGRWTELEGARGGYPTALIRRNLYSQVSCCLARHLAQAVIDRQPELECDRAL*
Ga0134122_1331793923300010400Terrestrial SoilMVEAGVVAQEAHDRKLQKYLEVCREEKIHFVPLAWESLGGATDTVHSTLRKWTDLEAARGGYPASSIRRNLYAQLSCCLQRHLAQAV
Ga0105246_1106145923300011119Miscanthus RhizosphereMTEAGVVAEEAHDRKLLKSLVVCQREGIHFVPLAWESTGGATETVHETIRKWTEMESARSGYPAKFIRSNLYSQISVSLQRSLAQAVIDRRVELNSERVL*
Ga0137348_106218923300011398SoilVAEEAHDRKLQKSLEVCKEEGIHFVPLAWESTGGTTETVHETIRKWTQLEGARGGYPAHLIRRNLYAQISCCLQRHLAQSVIDRRLELACERAL*
Ga0120174_105442113300012008PermafrostMEEAGVVAEEAHDKKLQKSLAVCEKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACGRAL*
Ga0136622_1022859423300012187Polar Desert SandMVAEDAHDRKLLKSLAVCEKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACDRAL*
Ga0136616_1035027213300012679Polar Desert SandIAMEAGMVAQDAHDRKLLKSLAVCEKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLEFACDRAL*
Ga0157287_108861723300012885SoilDVTITHPLQQKFLEIAMEEGGVVAEDAHDRKLTKSFEVCKKEGIHFVPLAWESTGGTTETVHETIRKWTQLEGARGGYPAHLIRRNLYAQISCCLQRHLAQSVIDRRTELVCERAS*
Ga0157293_1014442413300012898SoilSVVANDAHDRKLLKSLEVCQREAIHFVPLAWESTGGATETVHETIRKWTNMKSARSGYPAYLIRRNLYSQISVSLQRSLAQAVGGGTVPL*
Ga0157291_1031037513300012902SoilKSLVQRLSLETSPSSNINTHPLQKKFIEVAMEEAGVVAQDAHDRKLLKSLEMCKEEGIHFVPLAMGNAAGATETVHTTVRKWSDLEAARGGYSATLIRRNLYAQLSCCLQRHLAQAVIDRRPELECDRGL*
Ga0157283_1005026823300012907SoilVIKSLQECKDEGIHFVPLAWESIGGATETVHETIRKWTELEGARGGYPAYLIRRNLYSQISCCLQRHLAQAVIDRQLELACDHVL*
Ga0157290_1009853013300012909SoilLQQKYLKIAMEEAGVVAEDAHDRKLQKSLALCEKEGIHFVPSAWESTGGATETVHETVHKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQSVIDRRLELACDRAL*
Ga0157371_1079843323300013102Corn RhizosphereMEVADLEVCEEEGIQFVPLAWESTGGATETVHETVRKWTELESARGGYPAYMIRRNLYAQLSCCLQRHLAQAVIDRRLELGCDRVL*
Ga0157370_1102920913300013104Corn RhizosphereMEEAGMVAEEAHDRKLLKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTDLEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACGRAL*
Ga0157374_1206731613300013296Miscanthus RhizosphereRQEVAEVSQDVHKKKVFHFVPLAWESTGGATETVHETIRKWTELEGSRGGYPALLIRRNLYAQISCCLQRHLARAVIDRRVELACELAL*
Ga0157378_1292815513300013297Miscanthus RhizospherePLQKNYIEVANDEAGVAAQAAHDNKLKKALTACEEEELQYMTLAWESTGGATETVHKTLGKWMGLENSRGGYPLDIIRRTLYAQISCCLQRHLAQAVIDRQPERACARAS*
Ga0163162_1141977913300013306Switchgrass RhizosphereMVAEEAHDRKLLKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYMIRRNLYSQISCCLQRHL
Ga0157372_1259793223300013307Corn RhizosphereMTEAGVGVEVPHDKKLLKSLVVCQREGIHFAPLAWESTGGATETVHETIRKWTEMESARSGYPAKFIRSNLYSQISVSLQRSLAQAVIDRRVELNSERVL*
Ga0157375_1156948913300013308Miscanthus RhizosphereLQKKFLEIATGEAGMVAQDAHDAKLLKSLEVCKKEGIHFVPLAWESTGGATDTVHATIRKWTDLEGARSGYAAHLIRRNLYAQISCCLQRHLAQSVIDRRVELACERAL*
Ga0157375_1245521113300013308Miscanthus RhizosphereAFDITVTHPLQKKFIEIAMEEAGVVAEEAHDRKLLKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAFLIRRNLYAQISCCLQRHLAQAVIDRRLELACGRAL*
Ga0157375_1341355513300013308Miscanthus RhizosphereKSLALCEKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQSVIDRRLELACDRAL*
Ga0157380_1163279613300014326Switchgrass RhizosphereMEEGGVAAQDAHDRKLQKTLAVCRKEGIQFVPLAWESLGGATETVHETLCRLTEMEGARGGYPTALIRRNLYAQLSCSLARHLARAVLDRQPEVECDRVL*
Ga0182008_1068553213300014497RhizosphereLQKNFLEIAREKAGMVAEEAHKKLQKYLKMCTEEGIHFVPLAWESTGGATETVHETIRKWTELEGSRGGYPAHLIRRNLYAQISCCLQRHLAQAVIDRRVGERAL*
Ga0157376_1162048613300014969Miscanthus RhizosphereTISHPLQKKFLEIAMEEAGVVAEEAHDRKLQKSLAICEKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQLSCCLQRHLAQAVIDRRLELECGRAL*
Ga0167656_104096923300015076Glacier Forefield SoilLQKKFIEIAMEEAGVVAEDAHDRKLKKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACGRAL
Ga0182040_1176222123300016387SoilMSGAGVAAQEAHDRKLLKSLEVCKAEGLHFVPLAWESTGGATDSVHATVRSWTDLESARGGYDPDTIRENLYSQLSCCLQRHLAQAVIDRQP
Ga0163161_1014015123300017792Switchgrass RhizosphereVAQDAHDKKLLKSLEVCKQEGIHFVPLAWESTGGATDTVHATIRKWTDLEGARSGYAAHLIRRNLHAQSSCCLQRHLAQSVIDRRVELACERAL
Ga0163161_1152060713300017792Switchgrass RhizosphereMVAEEAHDRKLQKSLKVCEEEGIHFVPLAWESTGGATETVHETIRKWTELEGARGGFPAYLIRRNLYAQISCCLQRHLAQAVIDRRVELACAQAL
Ga0184624_1030428513300018073Groundwater SedimentTVTHPLQQKFLEIAMEEGGVVAEDAHDRKLTKSFEVCKKEGIHFVPLAWESTGGTTETVHETIRKWTQLEGARGGYPAHLIRRNLYAQISCCLQRHLAQSVIDRRTELVCERAS
Ga0184640_1016911913300018074Groundwater SedimentMVAKEAHIRKLEKSLDVCKKADISFVPLAWESTGGTTETVHETVRKWTELEGARGGYPASVIRRNLYAQISCCLQRHLAQSVIDRRTELACERVW
Ga0066667_1040926013300018433Grasslands SoilVAEETHDRKLLKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYARHLAQAVIDRRLELACDRAL
Ga0190269_1113657223300018465SoilLQKKFIEIAMEEAGMAATEAHDRKVIKSLQECKDEGIHFVPLAWESTGGATETVHETIRKWTELEGARGGYPAHLIRRNLYSQISCCLQRHLAQAVIDRQLELACDHVL
Ga0190268_1185717613300018466SoilLVCIDGLSTAIPILLTCFSARSRPTVILQKKYLDIAMEEAGVVAEEAHDRKLLKSLGVCQREGIHFVPLAWESTGGATQTVHETIRKWTEMESARSGYPAYLIRRNLYCQVSVSLQRSLAQAVIDRRVEFDCERVL
Ga0190271_1205784923300018481SoilMEEAGTVAQDAHDKKLLKSLEVCKKEGIHFVPLAWESTGGATDTVHATIRKWTDLEGARSGYAAHLIRRNLYAQISCCLQRHLAQSVIDRRVELACERAL
Ga0190271_1209507513300018481SoilVAEEAHDGKLQKSLEMCKEEGIHFVPLAWESTGGATETVHETLRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQSVIDRRTELACERAL
Ga0173479_1063042813300019362SoilVAEDAHDRKLTKSFEVCKKEGIHFVPLAWESTGGTTETVHETIRKWTQLEGARGGYPAHLIRRNLYAQISCCLQRHLAQSVI
Ga0210395_1049125813300020582SoilVAAQAAHNRKQEKALKECMEEGLQFVPLAWESTGGATETVHETIRHWTNLESARGGYLVGTIRQNLYSQISCCLQRHLAQAVLDRQPEYACSHAL
Ga0210406_1030838523300021168SoilMIEVCEKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACDRAL
Ga0210397_1157408713300021403SoilRWPTHCKKKHQSVAMDEAGVAAEEAHDNKLKKHLEDCKKEGLQFVPLAWESTGGATATVHKTLGKWTGLESERGGYPLAIIRQNLYAQVSCCLQRHLAQCVLDRQPERGCSFAL
Ga0247774_117954423300022903Plant LitterMEEAGVVAEDAHDRKLQKSLALCEKEGIHFVPLAWESTGGATETVHETVHKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQSVIDRRLELACDRAL
Ga0247780_122420923300023265Plant LitterCMTLEDAHDRKLQKSLKVCEAEGIHFVPLAWESTGGATETVHETLRKWTDLEGARGGYPAHLIRRNLYSQISCCLQRHLAQSVIDRRVELACDRAFSFLFFFFRFVVGGRPRR
Ga0207692_1019117513300025898Corn, Switchgrass And Miscanthus RhizosphereTISHPLQLKYIEVAMEEAGVAAQDAHDKKLQKSLAICDKEGLHFVPLAWESLGGATETVHDTLGRWTDLEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELSCDRVL
Ga0207688_1052465723300025901Corn, Switchgrass And Miscanthus RhizosphereMVAQDAHDAKLLKSLEVCKKEGIHFVPLAWESTGGATDTVHATIRKWTDLEGARSGYAAHLIRRNLYAQISCCLQRHLAQSVIDRRVELACERAL
Ga0207699_1134845313300025906Corn, Switchgrass And Miscanthus RhizosphereISHPLQKKFIEIAMEEAGVVAEEAHDRKLQKSLAMCEKEGIHFVPLAWESTGGATETVHETVRKWSELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELSCDRVL
Ga0207645_1062314313300025907Miscanthus RhizosphereVLPRVLSEDCKKEGLHFVPLAWESTGGAAEAVHTTIRKWTDLEAARGGYPVEIIRQNLYAQVSCCLQSHLAQAVLDRLPERSCSRAL
Ga0207664_1056858913300025929Agricultural SoilSAFDITITHPLQKKFIEIAMEEAGVVAEEAHDRKLLKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACGRAL
Ga0207664_1176494523300025929Agricultural SoilEAGVAEEAHDRKLKKSLEVCQKEGLHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACDRAL
Ga0207644_1145831013300025931Switchgrass RhizosphereGVVAEEAHDRKLLKSLGVCQREGIHFVPLAWESTGGATQTVHETIRKWTEMESARSGYPAYLIRRNLYSQVSVSLQRSLAQAVIDRRVELNSERVL
Ga0207669_1135294723300025937Miscanthus RhizosphereAMDEAGMVADEAHDRKLQKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQSVIDRRLELACDRAL
Ga0207668_1103518823300025972Switchgrass RhizosphereDRKLLKSLEVCQKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYMIRRNLYSQISCCLQRHLAQAVIDRRLEQACDRVL
Ga0207678_1123175113300026067Corn RhizosphereIFHPLQKKYLDIAMTEAGVVAEDAHDRKLLKSLEVCQREGIHFVPLAWESTGGATETVHETIRKWTNMESARAGYPAKLIRRNLYSQISVSLQRSLAQAVIDRQVELGCERML
Ga0209048_1037793213300027902Freshwater Lake SedimentMEEAGVVAEEAHDKKLQKSLAMCEKEGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELTCDRAL
Ga0307504_1045779313300028792SoilVAAQDAHDNKLQKSLAICDKEGLHFVPLAWESLGGATDTVHDTLNRWTELEGARGGYPTELIRRNLYSQVSCCLARHLAQAVIDRQPELGDRVL
Ga0302289_111129613300028857FenMVAEEAHDRKLQKSLKVCEEEGILPLAWESTGGATETVHETIRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRELACERAL
Ga0247043_105420923300029895CryconiteVVAQEAHDRKLKKSFEVCQKGGIHFVPLAWESTGGATETVHETVRKWTELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACDRAL
Ga0074002_1431502013300031086SoilAGVVAEELMTEGWKSLEVCQKEAIHFVPLAWESTGGATETVHETVRKWTELEGARGCYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACGRVL
Ga0170824_10505360323300031231Forest SoilLEVCKAEGIHFVPLAWESLGGATETVHSTVRKWSELEAARGGYSAVLIRRNLYAQISCCLQRHLGQAVIDRQYERVCERVL
Ga0170824_10754888313300031231Forest SoilVTMLTHCSKDILKLRWRRRGVAAQDAHDRKLQKSLDTCGKEGLHFVPLAWESLGGATETVHDTLCRWTELEGARGGYPTAMIRRNLYSQLSCCLARHLAQAVIDRQPELECDRVL
Ga0170824_12086392713300031231Forest SoilSLAVCEKEGIHFVPLAWESTGGATETVHETVRKWSELEGARGGYPAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACDRAL
Ga0170824_12603682623300031231Forest SoilMEEAGVVAQEAHDRKLLKSLEVCKAEGIQFIPLAWESLGGATETVHTTVRKWSDLEAARGGYSATLIRRNLYAQLSCCLQRHLAQAVIDRRPELACDRGL
Ga0308174_1191903813300031939SoilMEEAGVVAEEAHDKKLQKSLEVCEKEGIHFVPLAWESTGGATETVHETVRKWTELESARGGYHAYLIRRNLYAQISCCLQRHLAQAVIDRRLELACDRAL
Ga0306922_1155121813300032001SoilMSGAGVAAQEAHDRKLLKSLEVCKAEGLHFVPLAWESTGGATDSVHATVRSWTDLESARGGYDPDTIRENLYSQLSCCLQRHLAQAVIDRQPELSSSRAL
Ga0318562_1054451113300032008SoilMASRRPAFDVTVTHPLQLNSIDVANDEGGVAAGVAHDNKLKKSLEVCKAEGLQFVPLAWEATGGATETVHETLGKWTGLESDRGGYPVETIRWALYGQVSCCLQRHLSQAIIDRQPERECDRAL
Ga0373950_0170667_132_4613300034818Rhizosphere SoilLQKKFLEIATGEAGMVAQDAHDAKLLKSLEVCKKEGIHFVPLAWESTGGATDTVHATIRKWTDLEGARSGYAAHLIRRNLYAQISCCLQRHLAQSVIDRRVELACERAL

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.