| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029834 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321311 | Ga0307324 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Gly1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 33462271 |
| Sequencing Scaffolds | 20 |
| Novel Protein Genes | 22 |
| Associated Families | 22 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 10 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 2 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Leadbetterella → Leadbetterella byssophila | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin016 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020363 | Metagenome / Metatranscriptome | 224 | Y |
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F028541 | Metagenome / Metatranscriptome | 191 | Y |
| F029768 | Metagenome / Metatranscriptome | 187 | N |
| F030405 | Metagenome / Metatranscriptome | 185 | Y |
| F045728 | Metagenome / Metatranscriptome | 152 | Y |
| F049017 | Metagenome / Metatranscriptome | 147 | N |
| F051952 | Metatranscriptome | 143 | N |
| F056642 | Metagenome / Metatranscriptome | 137 | Y |
| F059033 | Metagenome / Metatranscriptome | 134 | N |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F064746 | Metagenome / Metatranscriptome | 128 | N |
| F068879 | Metagenome / Metatranscriptome | 124 | N |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F077342 | Metagenome / Metatranscriptome | 117 | N |
| F078767 | Metagenome / Metatranscriptome | 116 | N |
| F081379 | Metagenome / Metatranscriptome | 114 | N |
| F082734 | Metagenome / Metatranscriptome | 113 | N |
| F092121 | Metagenome / Metatranscriptome | 107 | N |
| F099361 | Metagenome / Metatranscriptome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307324_101633 | Not Available | 1955 | Open in IMG/M |
| Ga0307324_102143 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1754 | Open in IMG/M |
| Ga0307324_104512 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1236 | Open in IMG/M |
| Ga0307324_104570 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 1229 | Open in IMG/M |
| Ga0307324_105914 | Not Available | 1076 | Open in IMG/M |
| Ga0307324_106193 | Not Available | 1051 | Open in IMG/M |
| Ga0307324_106920 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Spirosomaceae → Leadbetterella → Leadbetterella byssophila | 994 | Open in IMG/M |
| Ga0307324_107740 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 931 | Open in IMG/M |
| Ga0307324_109406 | Not Available | 831 | Open in IMG/M |
| Ga0307324_109653 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales | 820 | Open in IMG/M |
| Ga0307324_109945 | Not Available | 806 | Open in IMG/M |
| Ga0307324_113155 | Not Available | 687 | Open in IMG/M |
| Ga0307324_115496 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 622 | Open in IMG/M |
| Ga0307324_115912 | Not Available | 612 | Open in IMG/M |
| Ga0307324_117186 | Not Available | 584 | Open in IMG/M |
| Ga0307324_118609 | Not Available | 557 | Open in IMG/M |
| Ga0307324_120118 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 532 | Open in IMG/M |
| Ga0307324_121252 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC | 516 | Open in IMG/M |
| Ga0307324_121630 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin016 | 510 | Open in IMG/M |
| Ga0307324_121750 | Not Available | 508 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307324_101633 | Ga0307324_1016331 | F082734 | ERRVSHRHLFGGQTITWQAFDEEEAKKRGISYSYWKDIHYSQETAEKVPFFVLSDDGIVVPIYSISFIRSGIVLRSAFGEFHLPNSGSRYYHDRAKMLVLTENRSQTEDYINYKSTPGALLRGAVVRMAANGLDVGEIVKILCVSPKSQRATKIKQFYKSEECTRMVREEVRKILENCGVTEEAVVKMLLEAREVALEKKDAANMLRAAENFVDMYGMKEKDRQIDTRTFEVESEVEDLKKLEKVSDRLKLTQKEEKDAQTN |
| Ga0307324_102143 | Ga0307324_1021434 | F030405 | PGCFCTRDALQDYGVVLSILALAKTVTPEGSPRQEPGQAAPPTT |
| Ga0307324_104512 | Ga0307324_1045121 | F028541 | QERQGASMNEQERLKLINRLKTARTSEERDEILWYLAGQDKAARGKVQRAEPTGTGKPAPVPAPEKHPLGLPAGKLGGMGSITSLLFLFYGLVTIAAAAAKIVQGQMEGDEIKQLIMGGIFLVVGVVLFVKAKRAQRKAAEEA |
| Ga0307324_104570 | Ga0307324_1045701 | F081379 | MKLTTLGAADALGTPIPVFIPDTYRTRLVTTTTGVVTTPSFDSSEEARPYVKITATQEAAETDLYLYALGNVYEANHIQLHITVGNSDESYSIERKEVDLILTINLKTGFQTIAKIVEYIGFINNALGKTIISCSYDATKSSYSISSAVRTYFNSYRPGRCANLVRILTFDDGVFIGNFPESGDPWKDSNTIVPLASMPLVAGVETYIMLSPNEMLSVSGGGTAGKKVYITPQRNY |
| Ga0307324_105914 | Ga0307324_1059141 | F099361 | NIKNTDSISFLIANSGNQKKYHPVSELKADILADVETDAAFQDIIIQGVLGKLAAPVLTTKSTIIKNSNDPTIAIEITKNTFIEGDSENAGNWIIDFGATDLILNTITKVSATEMRITTTGKAEEGTIRILALKDCFDAPIVDSTVLEIEVQESGE |
| Ga0307324_106193 | Ga0307324_1061931 | F078767 | VGILPEVLIFSGNNNPFGFILLNSETTENDNGGILTQLLDISIFIITQNGINKTKEHCNVLYAAIGKILNSSGLNSKTALVNLETINWHADMPFVTQLVGDLDIISSINFNIKYMNAR |
| Ga0307324_106920 | Ga0307324_1069201 | F068879 | MKKRRTVHNRSVYVIGAPWRDNWVTKEEGFVAGATARPGSRRGLPPGVTVFANARINKST |
| Ga0307324_107740 | Ga0307324_1077402 | F070158 | AQKMADATYYQEGATGLGKLDASSEKPSTEASSPSDAAPEANGNEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAERAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMGVTRLKEEYRKKGLSVY |
| Ga0307324_109406 | Ga0307324_1094061 | F062800 | SSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLASTASATIRVHYHIEWFDLQYAV |
| Ga0307324_109653 | Ga0307324_1096531 | F045728 | MQLASAPREYSGRNENPSMAVQAAPAPAGDSLLVSRFLPTRE |
| Ga0307324_109945 | Ga0307324_1099451 | F025291 | ASKNKQPNQRRGGYKPSTKTKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFQNMAVVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNYNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307324_113155 | Ga0307324_1131551 | F051952 | DEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAVLTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSSN |
| Ga0307324_114459 | Ga0307324_1144592 | F020914 | MAIYQKYGFAIDQILSEDQALPNAQPGDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGLTANAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSADESAEKVEAFSVRR |
| Ga0307324_115496 | Ga0307324_1154961 | F077342 | MARTLNEFIVSTGNYVYEITDAEMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGRIEQVFDISAQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAEKQRREILNPKRIF |
| Ga0307324_115912 | Ga0307324_1159121 | F059033 | GIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNVPSFGYEKAFKGFHQYAKDLGQVIAQKGATTAYRSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQPIPIVTDTTTNKQMNIFKWIFSAYFTLIIPSAKSVAVITQIDTSHLPTAD |
| Ga0307324_117186 | Ga0307324_1171861 | F070165 | IATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV |
| Ga0307324_118609 | Ga0307324_1186091 | F056642 | KINTMEKLCNCYAQSENQIKQEIYIPPVITVLEITLEKGFAASSASGTEDWGSLTW |
| Ga0307324_120118 | Ga0307324_1201181 | F064746 | GDFDDKWTNGYGDTETYKPANLEDIQFGIPDGAYDWTGAENYNAFRYRSGEPSGSITKYGWAHIFVLKPDDDLSYSSSIEMLRHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVQGELITSEDYPAFINDNSQGAIAFFLDDGKVCVIDAFTTNNFGMSAWDIIDSITV |
| Ga0307324_121252 | Ga0307324_1212521 | F092121 | MPKHFYTLLIIPHKKKDSVKKFLATPRHFRLATTLLVALFCFLGYCAVDYLTIKLEQMELFNLRRLTSTQQEQIDTLEGKITFFERKLAELKQVDEKIRTMAMDLAGKPRKASRKETAPAREQALGVGGPMPAGETGADKLTSLNRHMD |
| Ga0307324_121630 | Ga0307324_1216301 | F020363 | PLLALTFGGMCCWRRFGVARVFALVMRCRVMRLVVNSRVGKNRDTRRESPAGAGAGRTADHLTILFSQKVLAVRKGNDLYRPVMGRYFFMIL |
| Ga0307324_121750 | Ga0307324_1217501 | F049017 | NNEISAVTMSGTDTTKFREFGADIDSIKFTIEGTGSASYSEVQKLEAKFSKKTTALITAKNSLLDAVACGVAIIRVNNNGSAWLSGYTVKDKNRRAYNKITTNFDTGAKPSDEGTAAYTITLEAEGFDDELPFDTTLNASIIGGAATFIDYN |
| Ga0307324_122379 | Ga0307324_1223791 | F029768 | LDSVLREQEKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQREGYSLEQAKANYFLFQTVEYLEFLEQAKVMSNHSLRFMERATEKMNGILQETESKIEQAMKEIAQEQEK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |