NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029789

3300029789: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_28_stool_2



Overview

Basic Information
IMG/M Taxon OID3300029789 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0282895 | Ga0243734
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_28_stool_2
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size224451305
Sequencing Scaffolds17
Novel Protein Genes18
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F044554Metagenome154N
F055715Metagenome138N
F056682Metagenome137Y
F067845Metagenome125N
F068856Metagenome124N
F068941Metagenome124N
F070133Metagenome123N
F071325Metagenome122N
F075480Metagenome119N
F076064Metagenome118N
F078693Metagenome116N
F082714Metagenome113N
F095494Metagenome105N
F099269Metagenome103N
F101356Metagenome102N
F102166Metagenome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243734_1000469All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales44721Open in IMG/M
Ga0243734_1001687All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales14244Open in IMG/M
Ga0243734_1002717All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales9041Open in IMG/M
Ga0243734_1003555All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales7058Open in IMG/M
Ga0243734_1006899All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium4026Open in IMG/M
Ga0243734_1007709All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis3668Open in IMG/M
Ga0243734_1008456All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3401Open in IMG/M
Ga0243734_1009589All Organisms → cellular organisms → Bacteria3078Open in IMG/M
Ga0243734_1013415All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2346Open in IMG/M
Ga0243734_1023451All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae1494Open in IMG/M
Ga0243734_1027969All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1292Open in IMG/M
Ga0243734_1034445All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1084Open in IMG/M
Ga0243734_1039597All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii962Open in IMG/M
Ga0243734_1045998All Organisms → cellular organisms → Bacteria → Terrabacteria group843Open in IMG/M
Ga0243734_1054422All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes727Open in IMG/M
Ga0243734_1064776Not Available620Open in IMG/M
Ga0243734_1067462All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74596Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243734_1000469Ga0243734_10004693F082714MVVGIRFAADAPVRTVLQAVLPIFSTVDVDFLVREYWVCTFGNGLPERRFTSQEMQRALDALTPDEHAELFTIYALPHDTPPSSCEDFCARGFTMAFYAYDGDGYALLAQSEEQLRAVIETLRKAVEIRSVEAVERKTLARWQF
Ga0243734_1001687Ga0243734_10016873F070133VVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLRIYDWSFCAFPDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNSYISDAACIGQTVYFDIYLTNQQSEILFYDMKQQNITDSQTLHTANDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE
Ga0243734_1002717Ga0243734_10027171F055715LTKADEFDKINELLIERTAKKFERASKNRLKKFLTNEKLCDKINELIRVGTA
Ga0243734_1003555Ga0243734_10035551F095494VSDPKEKEVQAILQAIDYGHLPPRETQRRLLNIIQAEAARTDAPTDETKIHTCMDLLERLQGEQKPIAPARVDVLRQHIAAAHQKNERKRQKRKKIIAAAACSAAAIAVAFAVSHPLLWYENWTTADEQQHFVTSHEIAIEMLETAVADPTLPSGDTVEVQSISALDALIGRKTGIPEMVNGQWELQHRYVNFTRSGISISLMYVNAADAQQTIVGVINLISNPQYMMLSFEQSYEGTIQQFDGLNFYITENINKPVALWQ
Ga0243734_1006899Ga0243734_10068996F075480MNKTKQEKWQRAYGDTPDSFRQRVASSLPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGVYSPENGQLFASAVISADESVQLVAVEADMEHEVRLTTPVDAKLDPSGISWAEWAEQNGKTLVPIGMEATPTLQFLKVNGQTTDTPLIGAFLTQNPDGTVSLGIQVDLTE
Ga0243734_1007709Ga0243734_10077095F044554AQGKCCAAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL
Ga0243734_1008456Ga0243734_10084561F102166AFLMKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGSALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV
Ga0243734_1009589Ga0243734_10095891F068856LLALLMLVGMALAEETPDAALGDWYALPSDETVLRLTLREDGTFFFGTEGISGIEGKWRKTTDGEYNLAYTNRSSSLLDVIMSMVDSQAPAPDMTMTARLTESGLDVFYGSTAEGAVVHMARDAEELRTERTPRTDTPLEAFAGTWTMETMFLGTMQLTYTPEMGERQVFCTIDGLTMFPGAGLESFPEGTSFPLTFEDGVLRTTIPLTVQMAASSALVKEIVVDYDLTFFQTADGSLYATLRLSDVPDNPTTMFLLVPMEKE
Ga0243734_1013415Ga0243734_10134154F068941MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFDLYATGKNATLNG
Ga0243734_1023451Ga0243734_10234511F076064HISEELKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCAPDLKRRNETRRHPMPVLKLY
Ga0243734_1027969Ga0243734_10279692F068941MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYT
Ga0243734_1034445Ga0243734_10344454F026592CQNRLQTASPQGIAALAAQGGVATLTERSDETFSVVQFSSADRE
Ga0243734_1039597Ga0243734_10395972F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0243734_1045998Ga0243734_10459981F099269VHGVLLSVQVGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSF
Ga0243734_1050822Ga0243734_10508221F101356PVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYLYGQPNSDTYLKMKYESDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0243734_1054422Ga0243734_10544223F056682VAEKSDKQNTMKTQSRAGKAANQPIRQGEIYSASFGAFPSKNRSTFPIQKLGKIYENQEV
Ga0243734_1064776Ga0243734_10647762F078693MVLAPVRGAERFYIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEG
Ga0243734_1067462Ga0243734_10674621F071325KVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLDFEELLSCATAYL
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