NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300029714

3300029714: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36525



Overview

Basic Information
IMG/M Taxon OID3300029714 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133139 | Gp0283877 | Ga0245242
Sample NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36525
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size241224650
Sequencing Scaffolds14
Novel Protein Genes15
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. PC131
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → unclassified Ruminococcus → Ruminococcus sp. YE711
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F026592Metagenome / Metatranscriptome197Y
F036964Metagenome / Metatranscriptome169Y
F039198Metagenome164Y
F055715Metagenome138N
F067844Metagenome125N
F067845Metagenome125N
F076064Metagenome118N
F076190Metagenome118Y
F078004Metagenome117N
F088920Metagenome109Y
F090513Metagenome108N
F097493Metagenome104Y
F099451Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0245242_1000110All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes148676Open in IMG/M
Ga0245242_1000144All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia130924Open in IMG/M
Ga0245242_1000569All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes57670Open in IMG/M
Ga0245242_1001405All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii24529Open in IMG/M
Ga0245242_1002574All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales12156Open in IMG/M
Ga0245242_1005505All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes5767Open in IMG/M
Ga0245242_1007015All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis4616Open in IMG/M
Ga0245242_1009587All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → unclassified Oscillibacter → Oscillibacter sp. PC133499Open in IMG/M
Ga0245242_1011779All Organisms → Viruses → Predicted Viral2917Open in IMG/M
Ga0245242_1013457All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2576Open in IMG/M
Ga0245242_1014574All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → unclassified Ruminococcus → Ruminococcus sp. YE712385Open in IMG/M
Ga0245242_1039276Not Available889Open in IMG/M
Ga0245242_1044666Not Available778Open in IMG/M
Ga0245242_1045103All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia770Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0245242_1000110Ga0245242_100011035F076064LKKTTPGRALENLFYLQYDLPPEASFHATTEETKRPDELYLRKLLPELTRLKLQPRHVVANDEAYYAAMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRRNETRRHPMPVLKLY
Ga0245242_1000144Ga0245242_10001441F055715LTKADEFDKINELLIERTAKKFERTSKNKLKKFLTNEKFCDKINELIRVGTAEILD
Ga0245242_1000212Ga0245242_100021245F078004MIRHTLVIAVINTFYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTILIIGTIFHNTF
Ga0245242_1000569Ga0245242_100056934F099451MEIKNVGQLRKIIENISDDYEIEMRVRRKLSDEELKGCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSKNY
Ga0245242_1001405Ga0245242_100140521F026489LFVPRSAGAEAVAEGCSLLTPKENQKSASDFDALEPRKRGCSPLXXXXXXXXPEKTEDSRLFGVKIF
Ga0245242_1002574Ga0245242_10025747F039198MQITNTEIQGTKYVQIYLTEDELQKKETKDLVKKYKQEKYSVAIFVTGKKNYPEILEKIITKQVELNKNVC
Ga0245242_1005505Ga0245242_10055053F097493MYKFYMKNGTAYFYERGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMDTEIAKIQHTDITFEQPTAEQLEQIQAKTFASMSELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVDGE
Ga0245242_1007015Ga0245242_10070153F088920VSANLHHYPAFWAGLILHLILHFSQKAAIFAPKRAILLLFVPTLFFGFWAVFPLQASSKINGQTSLYQPWLSPYCLFKD
Ga0245242_1009587Ga0245242_10095871F026592LLAANSILCCLRTASPQGIDAQAAQGSVAPLTERSDETFSVGQFFSADRE
Ga0245242_1011779Ga0245242_10117794F036964MSFLKILFPALMVIGAFGSLVVNIVSKGDNPTSLQWIGACLLYTALMLRNRG
Ga0245242_1013457Ga0245242_10134573F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDVDSNMGYTGDLNDFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0245242_1014574Ga0245242_10145741F076190ADDSITISAKNVFMAASRVSGRVWSLVRITIPNGLKSVKIGVGKPQNNFLYPYFQREPL
Ga0245242_1039276Ga0245242_10392761F090513MAKCVRKMEWKLLHIKHILYMQPFGALKIAPQSIGNKNGTKAVLQGWA
Ga0245242_1044666Ga0245242_10446661F076190GSITISVKNVFMAASRVSGRVWSLVRITIPNDLKSVKIRVEKPQNNSLYPYFQREPL
Ga0245242_1045103Ga0245242_10451031F067844MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.