NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029542

3300029542: Human fecal microbial communities from Shanghai, China - P040V1



Overview

Basic Information
IMG/M Taxon OID3300029542 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133133 | Gp0283556 | Ga0244933
Sample NameHuman fecal microbial communities from Shanghai, China - P040V1
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size151261104
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Shanghai, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F026592Metagenome / Metatranscriptome197Y
F055715Metagenome138N
F078693Metagenome116N
F087335Metagenome110N
F087336Metagenome110N
F092228Metagenome107N
F099451Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0244933_100006All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii319977Open in IMG/M
Ga0244933_100278All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii71798Open in IMG/M
Ga0244933_100327All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii64652Open in IMG/M
Ga0244933_100799All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii29615Open in IMG/M
Ga0244933_101712All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes12384Open in IMG/M
Ga0244933_102140All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides9545Open in IMG/M
Ga0244933_102665All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae7267Open in IMG/M
Ga0244933_106733All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2739Open in IMG/M
Ga0244933_110540All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1811Open in IMG/M
Ga0244933_123503Not Available891Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0244933_100006Ga0244933_100006182F092228MKKKCTLVLISVLTVACVVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGSKLCCLDTTTNTRKILDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGMANSWVKGYLIDQLAIS
Ga0244933_100278Ga0244933_10027859F026489MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTXXXXXXXXXXXPEKTEDSRLFGVKIF
Ga0244933_100327Ga0244933_10032747F078693MVRAPVRGAERSFIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVETEKS
Ga0244933_100799Ga0244933_10079910F026489LVAKENQKTTSDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0244933_101712Ga0244933_10171215F087335MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIGPVLNETGEPELLIRCVTEESVETVYQRAANYD
Ga0244933_102140Ga0244933_1021405F099451MEIKNVGQLRKIIENLSDDYEIEMRVRRELSEEELKQCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSKIN
Ga0244933_102665Ga0244933_1026657F055715LTKANEFDKMNELLIERTAKKFERTSKNKLKKFLTNEKFCDKINELIQVGTAKIL
Ga0244933_106733Ga0244933_1067331F078693AERSFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVETEKS
Ga0244933_110540Ga0244933_1105403F087336MVAELEQVPKAFKAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFPGIAFQILPLKSKQKRAP
Ga0244933_123503Ga0244933_1235031F026592TASPQGIAALAVQGGVATLTERSDATFAGKQFSSADRE
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