NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029441

3300029441: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 029_10_30_stool_1



Overview

Basic Information
IMG/M Taxon OID3300029441 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133117 | Gp0282914 | Ga0243753
Sample NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 029_10_30_stool_1
Sequencing StatusPermanent Draft
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size272983430
Sequencing Scaffolds9
Novel Protein Genes10
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F026592Metagenome / Metatranscriptome197Y
F044554Metagenome154N
F055775Metagenome138N
F056682Metagenome137Y
F059106Metagenome134N
F087334Metagenome110N
F088914Metagenome109N
F097172Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243753_1001744All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii28400Open in IMG/M
Ga0243753_1002110All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae22955Open in IMG/M
Ga0243753_1021611All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1359Open in IMG/M
Ga0243753_1022907All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1279Open in IMG/M
Ga0243753_1038190All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales771Open in IMG/M
Ga0243753_1044993All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes659Open in IMG/M
Ga0243753_1047221All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes630Open in IMG/M
Ga0243753_1048044Not Available620Open in IMG/M
Ga0243753_1056617All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae527Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243753_1001744Ga0243753_100174410F026489LVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKVF
Ga0243753_1002110Ga0243753_10021103F097172MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATRKVTSAYKHHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLNNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLYENNYLARLRTILDNYKAEHPEYADVIEETYEYKTDFVNTIPTTKIKFTTKLKKGQTYVFIIDNIGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK
Ga0243753_1002110Ga0243753_10021104F097172MKKNVLKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHIDGYDKKGYPASYSKASFYKDLNSLPSVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYSDETDFVNKYPIDKDKFTTKLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK
Ga0243753_1021611Ga0243753_10216111F087334FVGAVAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAASLFEYREKHP
Ga0243753_1022907Ga0243753_10229072F044554VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQSLFSSLLFVSDTLAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL
Ga0243753_1038190Ga0243753_10381901F059106RVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV
Ga0243753_1044993Ga0243753_10449932F026592SPQGIAALAAQGGVATLTERSDATFSVGQFSSADRE
Ga0243753_1047221Ga0243753_10472211F056682MKMQSRAGKVANQSIRQGEMYPASFWAFPSKNRSTFPIQELRKN
Ga0243753_1048044Ga0243753_10480442F055775MAQIAQQDNLVIEVATTAAELDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINTNSGAVKAIALN
Ga0243753_1056617Ga0243753_10566172F088914GANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFTVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK
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