NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029327

3300029327: Anode biofilm microbial communities from glucose-fed MFC - GM-anode biofilm



Overview

Basic Information
IMG/M Taxon OID3300029327 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133115 | Gp0282670 | Ga0243509
Sample NameAnode biofilm microbial communities from glucose-fed MFC - GM-anode biofilm
Sequencing StatusPermanent Draft
Sequencing CenterTokyo University of Pharmacy and Life Sciences
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size146280189
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia2
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → Syntrophobacter fumaroxidans1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameElectrode-Associated Soil And Biofilms Microbial Communities From Mfcs In Japan
TypeEngineered
TaxonomyEngineered → Industrial Production → Engineered Product → Bioanode → Unclassified → Anode Biofilm → Electrode-Associated Soil And Biofilms Microbial Communities From Mfcs In Japan

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationJapan: Tokyo
CoordinatesLat. (o)35.638Long. (o)139.3817Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003085Metagenome / Metatranscriptome508Y
F008527Metagenome332Y
F021619Metagenome / Metatranscriptome218Y
F038735Metagenome / Metatranscriptome165Y
F051329Metagenome / Metatranscriptome144Y
F051648Metagenome / Metatranscriptome143Y
F056624Metagenome137Y
F056715Metagenome / Metatranscriptome137Y
F057843Metagenome / Metatranscriptome135Y
F086025Metagenome111Y
F089117Metagenome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243509_100038All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia185321Open in IMG/M
Ga0243509_100199All Organisms → cellular organisms → Bacteria → Proteobacteria60921Open in IMG/M
Ga0243509_100370All Organisms → cellular organisms → Bacteria38615Open in IMG/M
Ga0243509_100455All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia34131Open in IMG/M
Ga0243509_100909All Organisms → cellular organisms → Bacteria20619Open in IMG/M
Ga0243509_101614All Organisms → cellular organisms → Bacteria13051Open in IMG/M
Ga0243509_101924All Organisms → cellular organisms → Bacteria11213Open in IMG/M
Ga0243509_102560All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae8685Open in IMG/M
Ga0243509_104657All Organisms → cellular organisms → Bacteria4897Open in IMG/M
Ga0243509_105438All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophobacteraceae → Syntrophobacter → Syntrophobacter fumaroxidans4155Open in IMG/M
Ga0243509_122516Not Available935Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243509_100038Ga0243509_100038172F056624MTVSHEEFDNLANHCQTCRDETRDKLAAFDRRLLALEIIVRGEDGRNGIKSQINTLCLRFDAFEKKAIRWIAVGTALPGIVVGVLGVLKFIGKL
Ga0243509_100199Ga0243509_10019918F057843VGFIYKNHLLRSKSVQLSERDRWTLEVTVVRNYGSEGATEQTFSSEKTFHSKEIADMEGIMFARKIIDGEINGLSIEDR
Ga0243509_100370Ga0243509_10037014F008527MKTLPKMEISDDLDAQINQGMNVSDLCKADVIRQALRIGLPQFAARFQPPPLWLEERIREALAEPAEAISKGQFEKNMAAIADGR
Ga0243509_100455Ga0243509_1004551F051648MTAGIGTGQLAELVKQVQAGNKVLLTQGNKPVAKIVPAPQETAQSTDLRIRSLRGLRILTPVISQADIAEEMFRRE
Ga0243509_100909Ga0243509_10090912F086025MQAEYEMKVQVIRSKGRAARLFVNIPMPLAAALDIQAGERIRWQLLGRSDLRLVRLEAPSPAQGLKK
Ga0243509_101614Ga0243509_10161412F089117MNKXXXXIGFQLIVYSLLLAGLSYLVHHLAPDLAQTTLVTGLVGGALCLVWGVRAAAGSESKALPILTLIPVSFVMLSQTVIVWTGGSEVVTGRRSAAVVLTVLLALSVGMLMRVAYAGLVFDGQPASAVRGVGAKPGTTGKGAA
Ga0243509_101924Ga0243509_1019242F003085MYNGGKQISSDNRTESRQHDTPGRQQTYLQYGEQIGHHRGLRMRHVGKRVTRELGRASRFLGSTSRKKGDRHNQHPGVYRTTSPMDEPTPVRTGRNTKNASHQGTGRERKADRPGRTEAVVATHSTAGQGATSARKRGEPRPKGPTITLTGAREGNAGHDVCAKERQEGL
Ga0243509_102560Ga0243509_1025604F051329MQVPKRSPRQEYRLKQRERIDAAPVIAKKFPRLKALKVTLEYFDATGSTKQGEMKCKLNVDHAKSVLWFACPGVECSCGDFDLSEALVKAVRGGLKVATGELHCQGTRQRGDREPVVCRTLLRYKLNLNYD
Ga0243509_104657Ga0243509_1046576F021619MREELLIDLRRTQLLAVDTSLDDARRALARAARIPTAFAAELRAVLAVVAELERRVLADAES
Ga0243509_105438Ga0243509_1054385F038735MKVFIDSMLGYWILLLAISLGVAAMIYQLWLRNVL
Ga0243509_122516Ga0243509_1225161F056715MQEFRRVRGAIDSLIDGTKESIKQKSPSEAMQQLEQARGLIQELKQMSTAEQAAIVAKRETTIADLAEIAGNLKXXXXXRAKETLGQAATL
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