NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029322

3300029322: Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-59_Run3



Overview

Basic Information
IMG/M Taxon OID3300029322 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133112 | Gp0282518 | Ga0243376
Sample NameHuman fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-59_Run3
Sequencing StatusPermanent Draft
Sequencing CenterZhejiang University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size97366718
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P93121

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationChina: Hangzhou
CoordinatesLat. (o)30.0Long. (o)120.0Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F047125Metagenome / Metatranscriptome150N
F052660Metagenome142N
F062845Metagenome130N
F067845Metagenome125N
F076189Metagenome118N
F087335Metagenome110N
F090514Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0243376_100230All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii40898Open in IMG/M
Ga0243376_100500All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii16245Open in IMG/M
Ga0243376_103684All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium3077Open in IMG/M
Ga0243376_107365All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1987Open in IMG/M
Ga0243376_107877Not Available1900Open in IMG/M
Ga0243376_111212All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1486Open in IMG/M
Ga0243376_113303All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1302Open in IMG/M
Ga0243376_124643All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312771Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0243376_100230Ga0243376_1002306F090514MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLSPASIFFETDATKGSAFGMECRGRPFFIFCG
Ga0243376_100500Ga0243376_1005003F047125MDVVLLLIVLGVMLSGFWAADALDHIRKEIIRQEGKRRGWWS
Ga0243376_103684Ga0243376_1036843F087335MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPTLNEVGEPELLIGCVTDETVEEVYQRVSNYDFDEPCAGNMPS
Ga0243376_107365Ga0243376_1073651F026592CCLRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE
Ga0243376_107877Ga0243376_1078773F067845MKHWKNLFVCLLAGVLALGVLTACSGLGSGNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGHTDDLNAFLYWSGCYGVPNDVTVALLLDDSAAMTAWLYAPQADSAAAKLLEDAVGHSEMGAAFIDYNGTAYVVAVFR
Ga0243376_111212Ga0243376_1112122F076189VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL
Ga0243376_113303Ga0243376_1133032F052660MCILRVLPENTPEKIGQERARTEWTVVKSKIRLCIRNRSYGRFLHGSILMGIALPIPAHRAKSHDFACWWPAAADHSRSADALPGKSNF
Ga0243376_124643Ga0243376_1246432F062845MKKTPFILHEKFRSDNNEQRKEDFQKEFERYIIDRLLNSVPSRACT
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