NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029120

3300029120: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021209-24



Overview

Basic Information
IMG/M Taxon OID3300029120 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127425 | Gp0193079 | Ga0168814
Sample NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021209-24
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size169396425
Sequencing Scaffolds23
Novel Protein Genes37
Associated Families35

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1581
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis2
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii5
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii → Faecalibacterium prausnitzii M21/21

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHost-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013656Metagenome269Y
F026489Metagenome197N
F026592Metagenome / Metatranscriptome197Y
F032286Metagenome / Metatranscriptome180Y
F039198Metagenome164Y
F042095Metagenome159N
F047125Metagenome / Metatranscriptome150N
F050794Metagenome145N
F052660Metagenome142N
F058555Metagenome135N
F064725Metagenome128N
F067720Metagenome125Y
F067845Metagenome125N
F068855Metagenome124N
F070093Metagenome123N
F075481Metagenome119N
F076189Metagenome118N
F076190Metagenome118Y
F076653Metagenome118N
F078005Metagenome117N
F078006Metagenome117N
F080673Metagenome115N
F081354Metagenome114Y
F081453Metagenome114N
F083451Metagenome113N
F083452Metagenome113N
F084124Metagenome112Y
F089590Metagenome109N
F089592Metagenome109N
F090515Metagenome108N
F093883Metagenome106N
F097172Metagenome / Metatranscriptome104Y
F098313Metagenome104N
F099269Metagenome103N
F106193Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168814_100001All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes799438Open in IMG/M
Ga0168814_100017All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes289310Open in IMG/M
Ga0168814_100059All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158174686Open in IMG/M
Ga0168814_100125All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales109174Open in IMG/M
Ga0168814_100144All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes100290Open in IMG/M
Ga0168814_100237All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii73533Open in IMG/M
Ga0168814_100309All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium59260Open in IMG/M
Ga0168814_100977All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens19091Open in IMG/M
Ga0168814_100988All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis18980Open in IMG/M
Ga0168814_101159Not Available16195Open in IMG/M
Ga0168814_102110All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii9126Open in IMG/M
Ga0168814_104074Not Available5097Open in IMG/M
Ga0168814_106886All Organisms → cellular organisms → Bacteria3175Open in IMG/M
Ga0168814_108612All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2585Open in IMG/M
Ga0168814_110479All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis2174Open in IMG/M
Ga0168814_113188All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1795Open in IMG/M
Ga0168814_113946All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1716Open in IMG/M
Ga0168814_114527All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1659Open in IMG/M
Ga0168814_114710All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1641Open in IMG/M
Ga0168814_117615All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1415Open in IMG/M
Ga0168814_119722All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1287Open in IMG/M
Ga0168814_133279All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii → Faecalibacterium prausnitzii M21/2832Open in IMG/M
Ga0168814_147028All Organisms → cellular organisms → Bacteria620Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168814_100001Ga0168814_100001719F013656MKKIYKEAIKSEIETNINVLYSENKIVIYTNKVSLQKQLNKLIGEPTKEYKIKRSIAGSLWEVSLEDKTRIQKLIVKANIFEL
Ga0168814_100017Ga0168814_1000173F039198MKLTIAEIQGTKYVQIYLTEDELQKKETKDLVQKYKKEKHSVAIFVTGKENYPEILKKIVTKQVELNRNVC
Ga0168814_100059Ga0168814_10005990F068855VPTVEAQGPQVRKSLAPQGLQAEKEMENANVQNAGWLHSFDADYHYRGSDLHYHVNVSTALSEGGAVW
Ga0168814_100125Ga0168814_10012572F032286MVKWVCQIVTPVRHRALIFDARLFAGNAADDALVTGGTFRFCRLMCLCVKRRNIKPDSKRRSLPDSALFHADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRFRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRRKAGI
Ga0168814_100144Ga0168814_100144104F078005MKKNEFVKELERIIDMVKAEDDGFEYGGKVIFYKEDDDNYEISVKNIEMNLMVETNTMASMNDRTFACLMSEVYKQKFEL
Ga0168814_100144Ga0168814_10014416F064725VIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITERIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKFI
Ga0168814_100144Ga0168814_10014428F050794MQDLRIQRVKVLMMLYTSNYFVKVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKVMMRDLLDELKDDIDLNILIFDVTQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG
Ga0168814_100144Ga0168814_10014443F098313VNLINKINNFSNVREKKFDFVIYPLDLIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFVNLVRDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGHCVGEFINNKDMD
Ga0168814_100144Ga0168814_10014475F076653MTIRDKYFGWKDIFFDRFVHCCNEKSGQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYRCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFSSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDSFLGKKYRKNLRTFIYRGIVFFLDRIWHTPLFDRMGVKMKYNAYYCYAATSGIWYDKGFKRRLAKRFNRSLSGGGELFGANLACMVCDRRDIDWEALRFWLEKYDDPTDKGMVNSPIQFMYLYLYYTFNK
Ga0168814_100144Ga0168814_10014484F083451MYKSEKEKQILDLLMSRKDIRKLVEKSNECYFKMDFVGAMRYRQEIKDIVDRESKIMLTKSESLIGLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMAECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAEMVNETDRSKIEEFNKKLDYD
Ga0168814_100237Ga0168814_10023766F084124LNITALAFARATKENTLPFHGQRNELTVFLAFPVTMAIACFNKLSFSTQTTTLFAPEELLYRMIFMGAAQTRKPLKRLDLNFLII
Ga0168814_100309Ga0168814_10030915F080673MDEIELLRLQDEALSYLRDNITKDEAYYILTTDKDIIGILIADKKDGSKRIKILDMEYTVEKDDMLLLFDTDRIIDECLLVASYIGVNMYFRRQDANAILNNISREKVLKYPYIAIQLDNIQTIEKRRVIFEITGHRVDYDKVDFMFVYFMARIL
Ga0168814_100309Ga0168814_10030928F083452MSGRVKIKIKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEDELGAKLSIDLIERYIKR
Ga0168814_100309Ga0168814_10030947F058555MGTKIRFLHIMKSNFDKILTERYIPRNIQTKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVSKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRRMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTIKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNVTIGHLRLSYRGTIMHIIIAEYFIKDVFLGVKGVEMSKAG
Ga0168814_100309Ga0168814_10030952F093883MIIMRNMEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKSNATGKTKADE
Ga0168814_100309Ga0168814_10030958F089592MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKTPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGMDKDEVDRLVNQRVNNIMKPFEDISQKDLSQTNLEFWDDAKDKIFMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKKGDKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFKEVLEFYRIINVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKKVKDVKKKEDVGEGDKVNTEE
Ga0168814_100309Ga0168814_10030965F042095MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVDDPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQICKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIHPGPSDMWNYFDINTLPFFEVDKINPNITNFDFLNDWVSGERRTGWNDDNMSGRGLDHLTGFSVYHSNSIRVDKLPDYIYEMRSITWFVMDYSTHSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLAVSMYGSQYPDENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0168814_100309Ga0168814_10030968F089590MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLIVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIRRIADDEVKDKS
Ga0168814_100309Ga0168814_10030969F075481MMRLRISLRAIVCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFRLIK
Ga0168814_100309Ga0168814_10030975F106193VGCNTCKEKALRAERERIERSMMNHSSSTAVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILNGRAEHIKP
Ga0168814_100309Ga0168814_1003099F078006MIRGRFPAPWHNLNINDMGDNILRKAADELKKAGCRVFAWQDDTYNRNWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0168814_100977Ga0168814_1009772F099269VGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV
Ga0168814_100988Ga0168814_1009883F097172MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYKYHLEGCDKKGYVMDGFSKAAFYKDLNSLPAVKIGKTTINVPAVTSSVKSISKEKGNPIYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCMADGDLCQISKTGKKYGLDGVEDSDTVGKYDTLYENNYLARLRTILDNYKAEHPEYADVIEETYEYQRDFVNTIPTAKIKFTTKLKKGHTYVFIIDNRGMDKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK
Ga0168814_101159Ga0168814_1011593F067720MASTTYRHLGDVTGMFAAQEQFRHVTKMVTKCHRFAVLGNMVRNAGQLPQPFWLGAACGGGSCSAARCAARA
Ga0168814_102110Ga0168814_1021108F047125MDVVLLLMVLGVMLSGFRAADALDHIRQEILRQEGKRRGWWS
Ga0168814_104074Ga0168814_1040741F067720MASTTYHHFVDTNKMYAVQEQFRHATKMVTKRHQFASIGNMVRNAGQLPQPFWLGAACGGGSYSLSASVARA
Ga0168814_106886Ga0168814_1068864F076190SGGWNGRSSWVRTAGGSITIFVKNVFTAASRVLGRVWSLVRITIPNGLKYVKIGVEKPQNNSLYPYFQREPL
Ga0168814_108612Ga0168814_1086123F076189MPGRLCYLPGIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLHAIQSAQKQLRMLCNFHENTFGLLIFYANYAIL
Ga0168814_110479Ga0168814_1104793F081453LLAGENIIEKHISANPVCGTNIKAPEPAVKGAPGRKFV
Ga0168814_113188Ga0168814_1131882F081354VKDFSSIYPESRRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNPLR
Ga0168814_113946Ga0168814_1139462F090515MIRSIRGACQEGVITCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSIRTFLKS
Ga0168814_114527Ga0168814_1145272F026489VAKKNQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF
Ga0168814_114710Ga0168814_1147101F026489QKSASDFDALEPRKRGCSPLLTPKRWAAPEKTEDSRLFGVKIF
Ga0168814_117615Ga0168814_1176152F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMSHTDDLNDFLYWSGCDGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAKLLEDAAGHNEMGAAFIDYNGTAYVVAVFR
Ga0168814_119722Ga0168814_1197223F026592LRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE
Ga0168814_133279Ga0168814_1332791F052660MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFFYGGILMGIVLPIPSHRAKSHDFACWWPVAAGHSRSADALPGKSNF
Ga0168814_147028Ga0168814_1470281F070093FESLLLAEFCPFRIDPPMEPEQEHLSKLYSGSGIHSLPELNPNPL
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