NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029045

3300029045: Human fecal microbial communities from mother in Denmark - 343_M



Overview

Basic Information
IMG/M Taxon OID3300029045 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193655 | Ga0169661
Sample NameHuman fecal microbial communities from mother in Denmark - 343_M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size130858951
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-Q48961

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F026592Metagenome / Metatranscriptome197Y
F055715Metagenome138N
F055775Metagenome138N
F076189Metagenome118N
F081453Metagenome114N
F088921Metagenome109N
F089053Metagenome109Y
F090514Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169661_100124All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales102217Open in IMG/M
Ga0169661_105979All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3059Open in IMG/M
Ga0169661_107782All Organisms → Viruses → Predicted Viral2463Open in IMG/M
Ga0169661_110270All Organisms → cellular organisms → Bacteria1947Open in IMG/M
Ga0169661_112229All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia1685Open in IMG/M
Ga0169661_121580All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1005Open in IMG/M
Ga0169661_124427All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium889Open in IMG/M
Ga0169661_124484All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii887Open in IMG/M
Ga0169661_140539All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-Q4896540Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169661_100124Ga0169661_10012499F089053MEGPRPDKFAFGVRIGREVDGCRPAKGCVKKRIYESANGQPELSTAAEANVKNMEAFL
Ga0169661_105979Ga0169661_1059791F026592RTASPQGIDAQASQGSVAPLMERSDETFSGMQLFSADRE
Ga0169661_107782Ga0169661_1077822F055775MAQIAQQDNLVIEVTTTAAALDSATKKKLIECIEGGTITDVILVTKEDEKKISHARVVGWLVDTTADSPKYTIDIINANGGTVTAIKLN
Ga0169661_110270Ga0169661_1102702F055715LTKANEFDKINELLIERTAKKFERVSKNKLKKFLTNEKFCDKINELIQVGTAEILDN
Ga0169661_112229Ga0169661_1122293F081453MFPFFLLAGENIIEKHIFANPVCGTNIKAPEPAVKVTPGRKFM
Ga0169661_121580Ga0169661_1215802F026489SDFDALEPRKRGCSPLLTPKRRAAPEKTEDSRLFGVKIF
Ga0169661_124427Ga0169661_1244272F088921LGGCKKIAVKTSALGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKLAMIRYKMWSK
Ga0169661_124484Ga0169661_1244842F090514MNLRIHALKKASRQRPGVKTAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFAKRPIFVYFADILPRLTGAKWFVILLTIVPAGSRARAGSSLPLSPASIFF
Ga0169661_140539Ga0169661_1405391F076189VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELLACFDLHAIQSAQKQLHMLCNFHENTLGLLIFYTDYAII
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