Sample 3300027429

Overview

Basic Information
IMG/M Taxon OID	3300027429 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072048 \| Ga0207616
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-10 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	24424955
Sequencing Scaffolds	12
Novel Protein Genes	14
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000105	Metagenome / Metatranscriptome	2228	Y
F003318	Metagenome / Metatranscriptome	494	Y
F005544	Metagenome / Metatranscriptome	397	Y
F008110	Metagenome / Metatranscriptome	339	Y
F037795	Metagenome	167	Y
F038128	Metagenome	166	Y
F038225	Metagenome / Metatranscriptome	166	Y
F048340	Metagenome / Metatranscriptome	148	Y
F071355	Metagenome / Metatranscriptome	122	Y
F087420	Metagenome / Metatranscriptome	110	Y
F090831	Metagenome / Metatranscriptome	108	Y
F090935	Metagenome	108	Y
F094146	Metagenome / Metatranscriptome	106	Y
F101507	Metagenome / Metatranscriptome	102	N

Family

Category

Number of Sequences

3D Structure?

F000105

Metagenome / Metatranscriptome

2228

F003318

Metagenome / Metatranscriptome

494

F005544

Metagenome / Metatranscriptome

397

F008110

Metagenome / Metatranscriptome

339

F037795

Metagenome

167

F038128

Metagenome

166

F038225

Metagenome / Metatranscriptome

166

F048340

Metagenome / Metatranscriptome

148

F071355

Metagenome / Metatranscriptome

122

F087420

Metagenome / Metatranscriptome

110

F090831

Metagenome / Metatranscriptome

108

F090935

Metagenome

108

F094146

Metagenome / Metatranscriptome

106

F101507

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207616_100104	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
Ga0207616_100187	Not Available	986	Open in IMG/M
Ga0207616_100554	All Organisms → cellular organisms → Bacteria → Acidobacteria	812	Open in IMG/M
Ga0207616_101324	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	672	Open in IMG/M
Ga0207616_101645	All Organisms → cellular organisms → Bacteria → Proteobacteria	640	Open in IMG/M
Ga0207616_101801	Not Available	628	Open in IMG/M
Ga0207616_103504	Not Available	531	Open in IMG/M
Ga0207616_103515	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
Ga0207616_104008	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
Ga0207616_104261	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
Ga0207616_104425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	500	Open in IMG/M
Ga0207616_104439	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207616_100104

All Organisms → cellular organisms → Bacteria

1106

Open in IMG/M

Ga0207616_100187

Not Available

986

Open in IMG/M

Ga0207616_100554

All Organisms → cellular organisms → Bacteria → Acidobacteria

812

Open in IMG/M

Ga0207616_101324

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

672

Open in IMG/M

Ga0207616_101645

All Organisms → cellular organisms → Bacteria → Proteobacteria

640

Open in IMG/M

Ga0207616_101801

Not Available

628

Open in IMG/M

Ga0207616_103504

Not Available

531

Open in IMG/M

Ga0207616_103515

All Organisms → cellular organisms → Bacteria

531

Open in IMG/M

Ga0207616_104008

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

514

Open in IMG/M

Ga0207616_104261

All Organisms → cellular organisms → Bacteria → Acidobacteria

505

Open in IMG/M

Ga0207616_104425

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium

500

Open in IMG/M

Ga0207616_104439

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

500

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207616_100104	Ga0207616_1001042	F048340	HYLEEIEDALLRRDAMRVTALMRKRTATHLPREVREELLVLSRASRDSLRAPIRFLRFQHRMRELARGGEALPTAQTELHLEPPAAFGVIRRRPEDSERPAACDPADEEEGEPFDSRR
Ga0207616_100187	Ga0207616_1001872	F038128	MAPLGALSQSWVSAEAALPLGWQIRGLWRFDDLWIALAEASASDEYASGSGRHADQAIRRLADHLRQRRGLTTG
Ga0207616_100554	Ga0207616_1005541	F000105	RDWSPWLQRLDGDPKLYLPNAYAIEFLRYNLTPRRLAWFRGELAGHGLSPSDHARLAQQRGAAAFRFSAFEEKVLWGDLADLFHLVYHFSTPDDPMRKILADRHFDAIYLGQRRMGFISEEFRSLMLEIWHVKYLQMARFREVISSIPMEIKLSHFLNDGDSPDIPIPIYIEYLNKIRDLARRPM
Ga0207616_101324	Ga0207616_1013241	F090831	FKTKQMGRGGEVTLNWSGTLKGDEIAFTRMADGGQGQPQEFTLKRMQ
Ga0207616_101645	Ga0207616_1016451	F038225	FKETTMKRFSLALLGTVGAFFILTPAQAADYRVVQYNDTKICQVVDMAGLFKPIRTNYTVLTKKSIPTFDAAMKARAEVGAKAKCIL
Ga0207616_101801	Ga0207616_1018011	F090935	LEGTPSEEIFEGSSEEDASSWINTGGRSWLEERRRKRNA
Ga0207616_102716	Ga0207616_1027162	F101507	VTGITQEEIDNPLERLRLLSGDDDAIASFLDELDVSSPRERQMLAELARRTPLARPDRFDADHRRLIEALESLRRHGFHGSQAGASLGPFRYVLRWLVGLVARYLVVSHVKN
Ga0207616_103504	Ga0207616_1035041	F037795	MAGCVMQDASFSMDRSTMRWEQALIYAVGALLFIGAASSVFQLHGAAIVVGFILMVVSLGDGPHGLKVLYRDVKRHVVGP
Ga0207616_103515	Ga0207616_1035151	F003318	PGKKFNATAFNAKVNEGNAKFQQAIADEKFTARRPVLVDLKAQFDADAAHLKSKASKGKVTPALASEMKKDVNKIYDHALGR
Ga0207616_103515	Ga0207616_1035152	F005544	MPSAGKKKHKKPSRKKSELDSALDQVGEESSAAAIKEFQDLLGEAKGDTSELVRQNAEELERRLVLLKKRKIDKEDFDFFVENQKRDLRVFIDSQPAQQ
Ga0207616_104008	Ga0207616_1040081	F094146	SSTVFHDESRAKAERERLLALCPGYSLQQRPAGLPDASPLVDQAERLLAQQGDPDRIAALALQGIRADEWRLQRIRPFDWYSVELKRQAQRELQAKYWRVWSLQVRSERLAGRPQKAAELLAVMEQRTASPRSASDPLYWDALTTLVHLYREGSQKDLAIRKLSLMQDFL
Ga0207616_104261	Ga0207616_1042612	F071355	TTKESKAAMTILLQRLIEMCCRHEFTWPHAGVHGTAYQACLLCGAVYSYDCNTMQRTGRLVVPPDPRYPTLTESQPASE
Ga0207616_104425	Ga0207616_1044251	F087420	VASQAFACGSSRQMGPKLGTRAKRSATGVAIALALSALPHTPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR
Ga0207616_104439	Ga0207616_1044391	F008110	SVSAVMDEEEDQPKRPPRAPGHLEKEEARLWRMALAFLVLLATGLAAVSWERLQGLPYHLGAVSIGLLALSVLFAAYVYGRRREVSELKHLLHDLHDRTGVTPSDEQLDQLTQVIQRSQRSFKELIDSFDDVAFACSLDGTLRTVNRRVTQLLGLAYTDVVGHKMD

Scaffold ID

Protein ID

Family

Sequence

Ga0207616_100104

Ga0207616_1001042

F048340

HYLEEIEDALLRRDAMRVTALMRKRTATHLPREVREELLVLSRASRDSLRAPIRFLRFQHRMRELARGGEALPTAQTELHLEPPAAFGVIRRRPEDSERPAACDPADEEEGEPFDSRR

Ga0207616_100187

Ga0207616_1001872

F038128

MAPLGALSQSWVSAEAALPLGWQIRGLWRFDDLWIALAEASASDEYASGSGRHADQAIRRLADHLRQRRGLTTG

Ga0207616_100554

Ga0207616_1005541

F000105

RDWSPWLQRLDGDPKLYLPNAYAIEFLRYNLTPRRLAWFRGELAGHGLSPSDHARLAQQRGAAAFRFSAFEEKVLWGDLADLFHLVYHFSTPDDPMRKILADRHFDAIYLGQRRMGFISEEFRSLMLEIWHVKYLQMARFREVISSIPMEIKLSHFLNDGDSPDIPIPIYIEYLNKIRDLARRPM

Ga0207616_101324

Ga0207616_1013241

F090831

FKTKQMGRGGEVTLNWSGTLKGDEIAFTRMADGGQGQPQEFTLKRMQ

Ga0207616_101645

Ga0207616_1016451

F038225

FKETTMKRFSLALLGTVGAFFILTPAQAADYRVVQYNDTKICQVVDMAGLFKPIRTNYTVLTKKSIPTFDAAMKARAEVGAKAKCIL

Ga0207616_101801

Ga0207616_1018011

F090935

LEGTPSEEIFEGSSEEDASSWINTGGRSWLEERRRKRNA

Ga0207616_102716

Ga0207616_1027162

F101507

VTGITQEEIDNPLERLRLLSGDDDAIASFLDELDVSSPRERQMLAELARRTPLARPDRFDADHRRLIEALESLRRHGFHGSQAGASLGPFRYVLRWLVGLVARYLVVSHVKN

Ga0207616_103504

Ga0207616_1035041

F037795

MAGCVMQDASFSMDRSTMRWEQALIYAVGALLFIGAASSVFQLHGAAIVVGFILMVVSLGDGPHGLKVLYRDVKRHVVGP

Ga0207616_103515

Ga0207616_1035151

F003318

PGKKFNATAFNAKVNEGNAKFQQAIADEKFTARRPVLVDLKAQFDADAAHLKSKASKGKVTPALASEMKKDVNKIYDHALGR

Ga0207616_103515

Ga0207616_1035152

F005544

MPSAGKKKHKKPSRKKSELDSALDQVGEESSAAAIKEFQDLLGEAKGDTSELVRQNAEELERRLVLLKKRKIDKEDFDFFVENQKRDLRVFIDSQPAQQ

Ga0207616_104008

Ga0207616_1040081

F094146

SSTVFHDESRAKAERERLLALCPGYSLQQRPAGLPDASPLVDQAERLLAQQGDPDRIAALALQGIRADEWRLQRIRPFDWYSVELKRQAQRELQAKYWRVWSLQVRSERLAGRPQKAAELLAVMEQRTASPRSASDPLYWDALTTLVHLYREGSQKDLAIRKLSLMQDFL

Ga0207616_104261

Ga0207616_1042612

F071355

TTKESKAAMTILLQRLIEMCCRHEFTWPHAGVHGTAYQACLLCGAVYSYDCNTMQRTGRLVVPPDPRYPTLTESQPASE

Ga0207616_104425

Ga0207616_1044251

F087420

VASQAFACGSSRQMGPKLGTRAKRSATGVAIALALSALPHTPASAAKPPYGSCVAVTKQEYDSAKKQHMLQTRYTQYVRTGLPGRRQYWYCR

Ga0207616_104439

Ga0207616_1044391

F008110

SVSAVMDEEEDQPKRPPRAPGHLEKEEARLWRMALAFLVLLATGLAAVSWERLQGLPYHLGAVSIGLLALSVLFAAYVYGRRREVSELKHLLHDLHDRTGVTPSDEQLDQLTQVIQRSQRSFKELIDSFDDVAFACSLDGTLRTVNRRVTQLLGLAYTDVVGHKMD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300027429: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-10 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences