| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026850 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0099864 | Gp0111022 | Ga0208892 |
| Sample Name | Soil and rhizosphere microbial communities from Laval, Canada - mgHAC (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 37343531 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → rhizosphere → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Laval, Canada | |||||||
| Coordinates | Lat. (o) | 45.54 | Long. (o) | -73.72 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009108 | Metagenome / Metatranscriptome | 323 | Y |
| F011453 | Metagenome | 291 | Y |
| F015418 | Metagenome / Metatranscriptome | 255 | Y |
| F017338 | Metagenome / Metatranscriptome | 241 | Y |
| F018438 | Metagenome / Metatranscriptome | 235 | Y |
| F042969 | Metagenome / Metatranscriptome | 157 | Y |
| F059463 | Metagenome / Metatranscriptome | 134 | Y |
| F069724 | Metagenome / Metatranscriptome | 123 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208892_1000764 | Not Available | 1503 | Open in IMG/M |
| Ga0208892_1001352 | All Organisms → cellular organisms → Bacteria | 1091 | Open in IMG/M |
| Ga0208892_1002266 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha | 847 | Open in IMG/M |
| Ga0208892_1003571 | All Organisms → cellular organisms → Bacteria | 682 | Open in IMG/M |
| Ga0208892_1003997 | Not Available | 648 | Open in IMG/M |
| Ga0208892_1004595 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 609 | Open in IMG/M |
| Ga0208892_1006509 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 529 | Open in IMG/M |
| Ga0208892_1006843 | All Organisms → cellular organisms → Bacteria | 519 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208892_1000764 | Ga0208892_10007642 | F069724 | MALLLLRGFSTPSLLAQGEQRLPSYFNIRRDIPYCA |
| Ga0208892_1001352 | Ga0208892_10013522 | F015418 | MSIVSRRTFTRGLLASALVPGHSAFGQPNDPAGIAIIDTPNNAAKVAAKLSAQNVKV |
| Ga0208892_1002266 | Ga0208892_10022662 | F018438 | MGIDDESSHPELCSEVADGVTRTIVCLFREPDAGNLQVRFDEREQETESSQTGLRRRSESQVNSHREAKATAPVLDSTL |
| Ga0208892_1003571 | Ga0208892_10035711 | F011453 | SWKTERCAPQPAWSKGYMMKIRFAVRAAIILAAAGMLSACVTNRPGDDARLEYERSVADYENCLAANQMSTCEGERRIMRANKRALSAIEKRPSR |
| Ga0208892_1003997 | Ga0208892_10039971 | F042969 | MRNMIMMAAVAATAALSVPALAQATSPDGIVLTNTPEMAAGYSNKGQCQSTFRQLRNDQRKSGERGGEPYDSMSNSDYNAASNMTTRCEQLEDGRYYVVFNAAGF |
| Ga0208892_1004595 | Ga0208892_10045951 | F059463 | LAAGGASDIQAAMIDQVQRAHGLYSGDGTFRSAQLEVKLSIEAAVTLMGNFLDSARSDEDDDADKIVLTVFAHPPANKD |
| Ga0208892_1006509 | Ga0208892_10065091 | F017338 | QGGLLALRAGGSVTLAQRREGDQQELSVTVEGYLPRLAARTGAPLWTGMLYAKGQSPFHAAVSRRYFELLLRSRNA |
| Ga0208892_1006843 | Ga0208892_10068432 | F009108 | SKYRVETTFQTLGHRSTKVEISHYYSTTTLRAKLLNLIAKGKIARETRATLNAAKATIEAACRAG |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |