NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026844

3300026844: Soil and rhizosphere microbial communities from Laval, Canada - mgLAA (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026844 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0099864 | Gp0111017 | Ga0208760
Sample NameSoil and rhizosphere microbial communities from Laval, Canada - mgLAA (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size28024915
Sequencing Scaffolds9
Novel Protein Genes11
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available4
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → rhizosphere → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001436Metagenome / Metatranscriptome695Y
F007147Metagenome / Metatranscriptome357Y
F012999Metagenome / Metatranscriptome275Y
F021174Metagenome / Metatranscriptome220Y
F023906Metagenome / Metatranscriptome208N
F030107Metagenome / Metatranscriptome186Y
F031088Metagenome / Metatranscriptome183Y
F050534Metagenome / Metatranscriptome145Y
F070443Metagenome / Metatranscriptome123N
F088455Metagenome / Metatranscriptome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208760_100719Not Available759Open in IMG/M
Ga0208760_100799All Organisms → cellular organisms → Bacteria737Open in IMG/M
Ga0208760_102183Not Available564Open in IMG/M
Ga0208760_102223All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium562Open in IMG/M
Ga0208760_102492All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium546Open in IMG/M
Ga0208760_102501All Organisms → cellular organisms → Bacteria → Terrabacteria group545Open in IMG/M
Ga0208760_102552Not Available543Open in IMG/M
Ga0208760_102561Not Available542Open in IMG/M
Ga0208760_103464All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208760_100597Ga0208760_1005972F050534MEEVTDEPLYRDRVCGIDIGKAGMAATIRVPSDANP
Ga0208760_100719Ga0208760_1007191F001436MDTQKQDVATLIELLKMAAERWPRSEADQVSQSELLREDHSLLEMWPEACRRTGVGRREFPPGVIKLWKQRLGGAN
Ga0208760_100799Ga0208760_1007991F001436MCLFVMPDTATSVLLCVSSIAKGVVMDTHKQDVATLIELLKMAAERWPRSEADQVSQSDLLREDHSLLEMWPEACRRTGVGRREFPPGVIKLWKQRLGRAN
Ga0208760_102183Ga0208760_1021832F088455AMEAHKVLDIMALTLLLFAFAAAANMLLLAVERRLHRR
Ga0208760_102223Ga0208760_1022231F070443MIGLEGATCNTALIPEMEEIGANILLAEHIGRALVVGSEPADRLDVDVPGPLGKAGKPHVVDHTLTQRGHGRSPFGFKRQDLCPGTDQIPQHAVLNDYAFYG
Ga0208760_102492Ga0208760_1024921F007147DRVRRCLAGGVVVFLWIVPLQIRLLAEDDPLQKAVNYLFTGRNDPQDAPEILDRKSCVVVVSNLKFKQPIRYYLGRFRMDTAFINKTYAGSETVYSLDVKGGEVIVEYLDPGKSTVLHGNKSAQISLPGDIDQISKALALIASLCRNGKPAE
Ga0208760_102501Ga0208760_1025011F021174HAPRPVTPLSFDLVVRTLSQGFTAAQAEYDCPMMASSREINHYFYMAFHPIPDEAELQDRMTRYHDRLATKVPGVGKRWEEEWKPEVRALNEAERTADYEGLSDSELVTKLDELTDRMRHQWWIHGHINFVLLSSSAFCDLYDEVMQPAESTESYQTLQGFHTRSVDVSRGLWELSRKVK
Ga0208760_102552Ga0208760_1025522F012999MRMDYDLAESLMGAGFPQIGKGSLIGPMNKLVWRSDDRVYVPTLEELIEACGMNFGSLDKQHGGWLASANYGQSCFAE
Ga0208760_102561Ga0208760_1025611F023906MKCLACSAEMLLTEVCPDRTTVCGIERHTFRCSACAHTAKRLILNRSRVPITNLPVVIPPKAPVIDPHNGRPTAQSAWAKSIEKVNNKQAELKQRAAATTEWGSVVEKLSVRLKQQAVAARAEALARTVEKLRSL
Ga0208760_103240Ga0208760_1032401F030107IQRAHEPQGMITQMALAEARTPQVPEPEAVPTTIYRVEVTLASGATLLVAEATDFEYAMEVGMRVIDEAEAGGTVAIGDATIDGRQVVSVDVLGRNGA
Ga0208760_103464Ga0208760_1034642F031088MKLNVLAVALAASAIGAFSANAQVVIEERRDPPVVIEHDRPNTSVTVEKRDGFLGTEKKTITKETTGVGDCSSKTVHKEDITG
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