NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300026843

3300026843: Soil and rhizosphere microbial communities from Laval, Canada - mgHAA (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300026843 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0099864 | Gp0111020 | Ga0208126
Sample NameSoil and rhizosphere microbial communities from Laval, Canada - mgHAA (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size40932708
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Rhizosphere Microbial Communities From Centre Inrs-Institut Armand-Frappier, Laval, Canada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → rhizosphere → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationLaval, Canada
CoordinatesLat. (o)45.54Long. (o)-73.72Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001436Metagenome / Metatranscriptome695Y
F005249Metagenome / Metatranscriptome407N
F005549Metagenome / Metatranscriptome397Y
F007767Metagenome / Metatranscriptome345Y
F009926Metagenome / Metatranscriptome311Y
F018710Metagenome / Metatranscriptome233Y
F025824Metagenome / Metatranscriptome200Y
F026368Metagenome / Metatranscriptome198N
F037118Metagenome / Metatranscriptome168Y
F052030Metagenome / Metatranscriptome143Y
F057714Metagenome / Metatranscriptome136Y
F063548Metagenome129Y
F069724Metagenome / Metatranscriptome123Y
F097652Metagenome / Metatranscriptome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208126_1000325Not Available2232Open in IMG/M
Ga0208126_1000915Not Available1264Open in IMG/M
Ga0208126_1001170Not Available1118Open in IMG/M
Ga0208126_1001796Not Available902Open in IMG/M
Ga0208126_1002089All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia842Open in IMG/M
Ga0208126_1002462Not Available777Open in IMG/M
Ga0208126_1002616All Organisms → cellular organisms → Bacteria757Open in IMG/M
Ga0208126_1002818All Organisms → cellular organisms → Bacteria → Proteobacteria736Open in IMG/M
Ga0208126_1003610Not Available666Open in IMG/M
Ga0208126_1004553Not Available611Open in IMG/M
Ga0208126_1004910All Organisms → cellular organisms → Bacteria → Proteobacteria592Open in IMG/M
Ga0208126_1005406All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii570Open in IMG/M
Ga0208126_1005673Not Available559Open in IMG/M
Ga0208126_1007031Not Available515Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208126_1000325Ga0208126_10003254F097652VATWKYTTRTVAEAPFAWNDLMVRYSMNRGVSVQEVSPCNYEVVRYYAYTDELGAKNLPQNPNQDTTFWPAPSAGLNFFRGGYEHIVDDATKACLIASGVADESNFQSTTPDTGFGEGGFGEGGFGE
Ga0208126_1000915Ga0208126_10009152F069724MALLLLRGFSTPSLLAQGEQRLPSFFNIRRDIPLMIFPD
Ga0208126_1001170Ga0208126_10011701F057714MIQLQLFPPPATPGAPLPSKVRGEAKNLLASLLIAAIETKKRQPQEKSGHE
Ga0208126_1001796Ga0208126_10017962F026368MTTGWKIVTVLPNPSGASPLQEWSLVAIPDKGEAIRAIKARHPHAAIRVDSEADAELLEKYDVRDGKIFVLVEGS
Ga0208126_1002089Ga0208126_10020893F007767ESERERLGARVQGGMTQVLVAGVQPAAGNGVLAGIRAVTRFSSRGARRWW
Ga0208126_1002462Ga0208126_10024621F005549RVPRGRGAAEWSVMLKFLRKLTAMPAVKYSIIAVTSFLWLVGFADQLPDIEQTVKYVGISLLMLAVAAMA
Ga0208126_1002616Ga0208126_10026162F063548MSRRLKQAAVVFIVVLVAAQFVRPDRTNPATDASRSIDAQAGTGSEFVA
Ga0208126_1002818Ga0208126_10028181F009926CRSAILEIIMLGSLRVGRWGATSKKGFDHVGEDDARLGDVEGSDGRVHLVEALAAAQKFGIDRADLVEHLAQFAEVGEELADFGVGRIRHVTDPRALAGSTDCGKIPLGAMPSSVDTVAVGPPAAFVGLDQRAAQYLFDRRQAARKVVATLAKSCG
Ga0208126_1003610Ga0208126_10036101F018710MATKTKTANHNARSRAPRTRRWTCSGCEVTVRYAAGSKSTPRRPEGWTKQGGQWLCLHCQREKAVEKATIGANGDGWASRRQALLEFELRRSPEEPDGVIAKRANCSTGHVRKVREELERDGKLRKAA
Ga0208126_1004553Ga0208126_10045532F025824MRINVLATALGLIIPILILTAVAGIRILILLPVVMSFWFLFYMPRWRRRVRLQARNLQKW
Ga0208126_1004910Ga0208126_10049101F001436VSFRDARHSDIGVVVLLCVSSIAKGVVMDTHKQDVATLIELLKMAAERWPRSEADQVSQSDLLREDHSLLEMWPEACRRTGVGRREFPPGVIKLWKQRLGREN
Ga0208126_1005406Ga0208126_10054062F037118MSSGNDASTQAQKRAAAQGRAQGLDVGWTVFSYLLAGMAAYGAIGWLIGRAVHVS
Ga0208126_1005673Ga0208126_10056732F005249MVKLTTKEDIALLVEEASEMFEETGCVPDVDGKKVRAEKIVPRAKRYILETIDKPKASYDATIWHSAGYTLVLSWLSQRWLKNCQKLAPTVLKDVDLHLPKDQRKLCLDWAADELTRQITRRRQRLH
Ga0208126_1007031Ga0208126_10070311F052030MPVDPRPAMPIVPPRQAAFRTRRTWLLAKLATCVTVLTAATAVLIVAAAAVAFTMT
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