Sample 3300026690

Overview

Basic Information
IMG/M Taxon OID	3300026690 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072067 \| Ga0207494
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A4a-11 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	11627122
Sequencing Scaffolds	18
Novel Protein Genes	19
Associated Families	19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	8
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001757	Metagenome / Metatranscriptome	641	N
F004468	Metagenome / Metatranscriptome	437	Y
F009364	Metagenome / Metatranscriptome	319	Y
F014159	Metagenome / Metatranscriptome	265	Y
F014512	Metagenome	262	Y
F030581	Metagenome / Metatranscriptome	185	N
F042201	Metagenome	158	Y
F056121	Metagenome	138	Y
F063305	Metagenome / Metatranscriptome	129	N
F064448	Metagenome / Metatranscriptome	128	N
F067256	Metagenome / Metatranscriptome	126	Y
F083220	Metagenome	113	Y
F083399	Metagenome	113	N
F084328	Metagenome	112	N
F085664	Metagenome / Metatranscriptome	111	Y
F089166	Metagenome / Metatranscriptome	109	Y
F090518	Metagenome / Metatranscriptome	108	N
F097293	Metagenome / Metatranscriptome	104	Y
F101572	Metagenome / Metatranscriptome	102	Y

Family

Category

Number of Sequences

3D Structure?

F001757

Metagenome / Metatranscriptome

641

F004468

Metagenome / Metatranscriptome

437

F009364

Metagenome / Metatranscriptome

319

F014159

Metagenome / Metatranscriptome

265

F014512

Metagenome

262

F030581

Metagenome / Metatranscriptome

185

F042201

Metagenome

158

F056121

Metagenome

138

F063305

Metagenome / Metatranscriptome

129

F064448

Metagenome / Metatranscriptome

128

F067256

Metagenome / Metatranscriptome

126

F083220

Metagenome

113

F083399

Metagenome

113

F084328

Metagenome

112

F085664

Metagenome / Metatranscriptome

111

F089166

Metagenome / Metatranscriptome

109

F090518

Metagenome / Metatranscriptome

108

F097293

Metagenome / Metatranscriptome

104

F101572

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207494_100023	All Organisms → cellular organisms → Bacteria → Proteobacteria	1360	Open in IMG/M
Ga0207494_100184	Not Available	940	Open in IMG/M
Ga0207494_100312	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	852	Open in IMG/M
Ga0207494_100399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	814	Open in IMG/M
Ga0207494_100443	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	795	Open in IMG/M
Ga0207494_100453	Not Available	791	Open in IMG/M
Ga0207494_100908	Not Available	673	Open in IMG/M
Ga0207494_101528	Not Available	599	Open in IMG/M
Ga0207494_101824	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
Ga0207494_101834	Not Available	572	Open in IMG/M
Ga0207494_101924	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	565	Open in IMG/M
Ga0207494_102086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
Ga0207494_102247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
Ga0207494_102319	Not Available	538	Open in IMG/M
Ga0207494_102567	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	526	Open in IMG/M
Ga0207494_102580	Not Available	525	Open in IMG/M
Ga0207494_102640	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521	Open in IMG/M
Ga0207494_102661	Not Available	520	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207494_100023

All Organisms → cellular organisms → Bacteria → Proteobacteria

1360

Open in IMG/M

Ga0207494_100184

Not Available

940

Open in IMG/M

Ga0207494_100312

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

852

Open in IMG/M

Ga0207494_100399

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

814

Open in IMG/M

Ga0207494_100443

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

795

Open in IMG/M

Ga0207494_100453

Not Available

791

Open in IMG/M

Ga0207494_100908

Not Available

673

Open in IMG/M

Ga0207494_101528

Not Available

599

Open in IMG/M

Ga0207494_101824

All Organisms → cellular organisms → Bacteria

573

Open in IMG/M

Ga0207494_101834

Not Available

572

Open in IMG/M

Ga0207494_101924

All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium

565

Open in IMG/M

Ga0207494_102086

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

553

Open in IMG/M

Ga0207494_102247

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

542

Open in IMG/M

Ga0207494_102319

Not Available

538

Open in IMG/M

Ga0207494_102567

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium

526

Open in IMG/M

Ga0207494_102580

Not Available

525

Open in IMG/M

Ga0207494_102640

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

521

Open in IMG/M

Ga0207494_102661

Not Available

520

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207494_100023	Ga0207494_1000231	F083399	MAEESAVSGDTRSWGFFATFVLGAIAFLAGQLAGMAALVGWYDFDLRNVPVLSQHGGAIILFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAI
Ga0207494_100184	Ga0207494_1001842	F056121	QRLFVGTWSSPVAIILKAIGFRLATVEAIYRSRLSDAEVIRDDLFQTKAEFIALRRPTAERIVRFYCARKATNSSNLS
Ga0207494_100312	Ga0207494_1003122	F030581	MKTQRESRRRVSRFTKMVAKFLHIPDGAAVYVIWAAWIAVIIIIGIIVMLWR
Ga0207494_100399	Ga0207494_1003991	F064448	MEYSAVLGADEVLSDKPFTDAAYTMREVDVMRHMLLHERERALQWIDIDPGSHIIREYDDEGHRHLIVIPDTRRLLETENLTAVGFFG
Ga0207494_100443	Ga0207494_1004432	F004468	MTTRSRLRVFHFADYESTTISEKALCQLQDREAQERGARDLQKPAAQATPGVIMEWWSIDLCQDY
Ga0207494_100453	Ga0207494_1004532	F042201	MRIHLTDRHLIPSLLAFMREHVHVTADRVGPQEIEVSQLGSQHAAGRRLELDLLLQTWRASHASVETRILD
Ga0207494_100908	Ga0207494_1009081	F089166	ELGYWAMVDALEAERNAAKKSIAVEDPSFTCEPGAEEAEPSSALRVQRTVDEPAP
Ga0207494_101528	Ga0207494_1015282	F014159	MAEERRRNELEAAVLAFRDARPEERTAMNAALTRNEASILDGLAQEAAEAAVREEDPERVRFGLAALALEGGWPDWRDTTVVLTLLHVSARKLDLDADRIFEEEAGALAYRPVKERDYFSTAGAEIIRSFAGRPDRLKELDDRDHELDLREAQLTADVEIRTDKLEDREQALAE
Ga0207494_101824	Ga0207494_1018241	F101572	DGLTTALLDVLANGFAIVALVAKHLFGIAVDIVHQRRNGGDIVGLAGRDHDADGQALGIGACIDLGREAAARTAERVTLGPPFPPAAQ
Ga0207494_101834	Ga0207494_1018341	F063305	VSLRPVRSTESASGRVKPERRFVTRETARLLPIVVPVALSGFAVLAFAIGQFAASNPEPEVLAGVFALLLAATFVEAHPVPIEGISSEGISLAAVFIVGTAVIYGWAPAVVMG
Ga0207494_101924	Ga0207494_1019241	F083220	YFINGNQLAKYNKATQEVTDLGPPQSVPLGYHALVVGADAWICSAAGSAGQNSYTQIYCLNPHDPSQHKFIDILKKTINGIAQHDPHWPTSAAGQTIGIHAMYGSAAGAWLDVGFVHHSWGVNGDSVFNLSTNTWSLMTNANMYSSGHSSIGAKFVNGCGSINGMYSGGACLRDPSNLMDATQYTFIM
Ga0207494_102086	Ga0207494_1020861	F009364	ASVQARRYSLDAVRRIALLSLAVFALVVLAGCGAASDQAQEQTLTPAQVRQTFKQATGRPLEPEAVSDPAWDQLGYGLDMPQSLVDRYGIFNVYVGKPGRSASLASFLKDKDTDKPLARSADGIYWELDSQSKTWVAYKRYSGNVVLVWFSGSKEQAADERFDRLDSILAGLPG
Ga0207494_102247	Ga0207494_1022472	F090518	MTKIELEQIDDGILNFNVSDEALESAGDNAVAANYTLGACT
Ga0207494_102319	Ga0207494_1023192	F067256	ARYRTVVREFEHTERVIEKKHRIEVLGALLEMHQQQHEPDDEYIKGLRQRLKGAQKQLGNMWPV
Ga0207494_102567	Ga0207494_1025671	F097293	SAGATGGGNAGTTTTEVVASANDVKALIPASLRKTCVKQSVADIGAVATAVCLPPAGATGFYPDRWQISIYPSGKAVRAAYAAEQRRQGLRSNSGKCTSLSWTGEGPWAHGPGRPGGRRLCYFDGTNAVIVWTHERLGQPNHRDILAIAREGGTDHVRLIGWWTYAHHLIGKAS
Ga0207494_102580	Ga0207494_1025801	F014512	MPTAGTPARLAFVFAVAALSSHLPISLGAQDPPCQMKVVSCNYAHLYSGEFSWTNTLNGPSSQFHEQVTVSVKNGVADCLGTVRETSNGQTTSGKVSGPGLFAVEFERDSADKLVYRITAACPTAAGMGSPVQRAELGHHDQETYQQRATAIAQKVLQGGSNYPAPETDE
Ga0207494_102613	Ga0207494_1026131	F085664	LTPEQIAANKNLAYPDQVHFNVAAFAMAQPNGNVGNFGNTPVGILRHPTWHEWDITLSRRFPVTFMGRKNSGVKLQFQTFNVFNEVQFTNMNASYTFTGANNSVNNSANTGKYTQSGDGLAAGTIAPRIMSLTLRFDW
Ga0207494_102640	Ga0207494_1026401	F001757	MRVLKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIPVPDNGLAQYYTEEASGLFRARISQPVSNGAVTVTPLVSRGRPDRPDRTKVV
Ga0207494_102661	Ga0207494_1026612	F084328	MRPKNAAPSVSDACPDWEAPAFTKLPIASRTGSGANVANDAPRAIEPEAPGQPLSKLG

Scaffold ID

Protein ID

Family

Sequence

Ga0207494_100023

Ga0207494_1000231

F083399

MAEESAVSGDTRSWGFFATFVLGAIAFLAGQLAGMAALVGWYDFDLRNVPVLSQHGGAIILFIFVSAPVQVAILALAAGYKGNIADYLGYKLPRRGEVVLCLAILAAMIAI

Ga0207494_100184

Ga0207494_1001842

F056121

QRLFVGTWSSPVAIILKAIGFRLATVEAIYRSRLSDAEVIRDDLFQTKAEFIALRRPTAERIVRFYCARKATNSSNLS

Ga0207494_100312

Ga0207494_1003122

F030581

MKTQRESRRRVSRFTKMVAKFLHIPDGAAVYVIWAAWIAVIIIIGIIVMLWR

Ga0207494_100399

Ga0207494_1003991

F064448

MEYSAVLGADEVLSDKPFTDAAYTMREVDVMRHMLLHERERALQWIDIDPGSHIIREYDDEGHRHLIVIPDTRRLLETENLTAVGFFG

Ga0207494_100443

Ga0207494_1004432

F004468

MTTRSRLRVFHFADYESTTISEKALCQLQDREAQERGARDLQKPAAQATPGVIMEWWSIDLCQDY

Ga0207494_100453

Ga0207494_1004532

F042201

MRIHLTDRHLIPSLLAFMREHVHVTADRVGPQEIEVSQLGSQHAAGRRLELDLLLQTWRASHASVETRILD

Ga0207494_100908

Ga0207494_1009081

F089166

ELGYWAMVDALEAERNAAKKSIAVEDPSFTCEPGAEEAEPSSALRVQRTVDEPAP

Ga0207494_101528

Ga0207494_1015282

F014159

MAEERRRNELEAAVLAFRDARPEERTAMNAALTRNEASILDGLAQEAAEAAVREEDPERVRFGLAALALEGGWPDWRDTTVVLTLLHVSARKLDLDADRIFEEEAGALAYRPVKERDYFSTAGAEIIRSFAGRPDRLKELDDRDHELDLREAQLTADVEIRTDKLEDREQALAE

Ga0207494_101824

Ga0207494_1018241

F101572

DGLTTALLDVLANGFAIVALVAKHLFGIAVDIVHQRRNGGDIVGLAGRDHDADGQALGIGACIDLGREAAARTAERVTLGPPFPPAAQ

Ga0207494_101834

Ga0207494_1018341

F063305

VSLRPVRSTESASGRVKPERRFVTRETARLLPIVVPVALSGFAVLAFAIGQFAASNPEPEVLAGVFALLLAATFVEAHPVPIEGISSEGISLAAVFIVGTAVIYGWAPAVVMG

Ga0207494_101924

Ga0207494_1019241

F083220

YFINGNQLAKYNKATQEVTDLGPPQSVPLGYHALVVGADAWICSAAGSAGQNSYTQIYCLNPHDPSQHKFIDILKKTINGIAQHDPHWPTSAAGQTIGIHAMYGSAAGAWLDVGFVHHSWGVNGDSVFNLSTNTWSLMTNANMYSSGHSSIGAKFVNGCGSINGMYSGGACLRDPSNLMDATQYTFIM

Ga0207494_102086

Ga0207494_1020861

F009364

ASVQARRYSLDAVRRIALLSLAVFALVVLAGCGAASDQAQEQTLTPAQVRQTFKQATGRPLEPEAVSDPAWDQLGYGLDMPQSLVDRYGIFNVYVGKPGRSASLASFLKDKDTDKPLARSADGIYWELDSQSKTWVAYKRYSGNVVLVWFSGSKEQAADERFDRLDSILAGLPG

Ga0207494_102247

Ga0207494_1022472

F090518

MTKIELEQIDDGILNFNVSDEALESAGDNAVAANYTLGACT

Ga0207494_102319

Ga0207494_1023192

F067256

ARYRTVVREFEHTERVIEKKHRIEVLGALLEMHQQQHEPDDEYIKGLRQRLKGAQKQLGNMWPV

Ga0207494_102567

Ga0207494_1025671

F097293

SAGATGGGNAGTTTTEVVASANDVKALIPASLRKTCVKQSVADIGAVATAVCLPPAGATGFYPDRWQISIYPSGKAVRAAYAAEQRRQGLRSNSGKCTSLSWTGEGPWAHGPGRPGGRRLCYFDGTNAVIVWTHERLGQPNHRDILAIAREGGTDHVRLIGWWTYAHHLIGKAS

Ga0207494_102580

Ga0207494_1025801

F014512

MPTAGTPARLAFVFAVAALSSHLPISLGAQDPPCQMKVVSCNYAHLYSGEFSWTNTLNGPSSQFHEQVTVSVKNGVADCLGTVRETSNGQTTSGKVSGPGLFAVEFERDSADKLVYRITAACPTAAGMGSPVQRAELGHHDQETYQQRATAIAQKVLQGGSNYPAPETDE

Ga0207494_102613

Ga0207494_1026131

F085664

LTPEQIAANKNLAYPDQVHFNVAAFAMAQPNGNVGNFGNTPVGILRHPTWHEWDITLSRRFPVTFMGRKNSGVKLQFQTFNVFNEVQFTNMNASYTFTGANNSVNNSANTGKYTQSGDGLAAGTIAPRIMSLTLRFDW

Ga0207494_102640

Ga0207494_1026401

F001757

MRVLKPLQDKATTGAGKRLVLPEPRRVRFLIRGEGSVSAGAVTIECCPESTKAGKFWMELATIPVPDNGLAQYYTEEASGLFRARISQPVSNGAVTVTPLVSRGRPDRPDRTKVV

Ga0207494_102661

Ga0207494_1026612

F084328

MRPKNAAPSVSDACPDWEAPAFTKLPIASRTGSGANVANDAPRAIEPEAPGQPLSKLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026690: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A4a-11 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences