| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300026667 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0053063 | Gp0054293 | Ga0208347 |
| Sample Name | Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized -NN613 (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 6494152 |
| Sequencing Scaffolds | 3 |
| Novel Protein Genes | 3 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil → Soil Microbial Communities From 10 Grassland Sites In Ca, Co, Ks, Ky, Mn, Mo, Nm, Sc, Tx, That Have Been Nitrogen Fertilized |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | grassland biome → land → fertilized soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Gorham, Kansas, USA | |||||||
| Coordinates | Lat. (o) | 39.05 | Long. (o) | -99.1 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F045906 | Metagenome / Metatranscriptome | 152 | Y |
| F053869 | Metagenome / Metatranscriptome | 140 | N |
| F073208 | Metagenome | 120 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0208347_100068 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 973 | Open in IMG/M |
| Ga0208347_100295 | Not Available | 640 | Open in IMG/M |
| Ga0208347_100389 | All Organisms → cellular organisms → Bacteria | 596 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0208347_100068 | Ga0208347_1000682 | F045906 | MNETVKPYRDPIPGRGSIELRRTAAGVYSWVITFWADAIVTDAHLMGMVDSVERVDQELKSRYPESGAKATSE |
| Ga0208347_100295 | Ga0208347_1002951 | F073208 | AVVTIAAGVTSLASLIVGLSGADFDFEAVSEAATFIALGTDAVEPVRWGLWLSMFGSYLLLVPVALHLLRWLRQDDPVVADLSTVAAGFYILLGAAGASVLASTLPDLIQQYADADAAMRAGLLNDFDLARRIGEDGLQGVVQNVAGAAWFLGMGSLLRRHRPALGAAAIAVGAFLVVNAAGIMVDVEALRFIGLTGNVLLAPAWAIGMGTSL |
| Ga0208347_100389 | Ga0208347_1003892 | F053869 | MILSILVTLAFVATLLFMLVRAFTGPVRHRHSRPVH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |