NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300025204

3300025204: Marine microbial communities from the Deep Atlantic Ocean - MP0203 (SPAdes)



Overview

Basic Information
IMG/M Taxon OID3300025204 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0054677 | Ga0208063
Sample NameMarine microbial communities from the Deep Atlantic Ocean - MP0203 (SPAdes)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size105599227
Sequencing Scaffolds20
Novel Protein Genes20
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1
Not Available10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus1
All Organisms → cellular organisms → Eukaryota2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSouth of Cape Verde, Atlantic Ocean
CoordinatesLat. (o)7.33Long. (o)-26.0Alt. (m)N/ADepth (m)4002.51
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001625Metagenome / Metatranscriptome661Y
F002745Metagenome533Y
F002753Metagenome / Metatranscriptome532Y
F013096Metagenome / Metatranscriptome274Y
F020717Metagenome / Metatranscriptome222Y
F040684Metagenome / Metatranscriptome161N
F050430Metagenome / Metatranscriptome145N
F052870Metagenome / Metatranscriptome142N
F068126Metagenome125Y
F071317Metagenome / Metatranscriptome122N
F076171Metagenome118N
F082562Metagenome113N
F084703Metagenome / Metatranscriptome112Y
F087736Metagenome110Y
F089571Metagenome109N
F092695Metagenome / Metatranscriptome107N
F095626Metagenome / Metatranscriptome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0208063_1001978All Organisms → cellular organisms → Bacteria5238Open in IMG/M
Ga0208063_1003152All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota3867Open in IMG/M
Ga0208063_1004128Not Available3246Open in IMG/M
Ga0208063_1005357All Organisms → cellular organisms → Bacteria2729Open in IMG/M
Ga0208063_1007874All Organisms → cellular organisms → Bacteria2103Open in IMG/M
Ga0208063_1009581All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1812Open in IMG/M
Ga0208063_1013344All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium1408Open in IMG/M
Ga0208063_1015735Not Available1243Open in IMG/M
Ga0208063_1019093Not Available1065Open in IMG/M
Ga0208063_1022095Not Available950Open in IMG/M
Ga0208063_1022553Not Available936Open in IMG/M
Ga0208063_1022910Not Available924Open in IMG/M
Ga0208063_1027910Not Available794Open in IMG/M
Ga0208063_1028315Not Available785Open in IMG/M
Ga0208063_1033077All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Odoribacteraceae → Odoribacter → Odoribacter splanchnicus698Open in IMG/M
Ga0208063_1037215All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium639Open in IMG/M
Ga0208063_1040529All Organisms → cellular organisms → Eukaryota598Open in IMG/M
Ga0208063_1046518Not Available535Open in IMG/M
Ga0208063_1047173All Organisms → cellular organisms → Eukaryota529Open in IMG/M
Ga0208063_1049968Not Available505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0208063_1001978Ga0208063_10019783F089571MLKKIIVIVFSVLFLVVPASSQHVQQKYAITDKDEKVILNDNGTWEYAEEDKQNYYYKKVPPKTYNYEFKSQTWEERIEQAAHEYWRIRAHAELEQLGIPVTRYDPTTSDVPLYLKLEGGRIRTDFDSFTPLARGEVIDISGLWDPDKGDNPTLKIQGKLFLQITMKLDDQKKLFSQYNQRNYIPIPDDFQRILEFRDSLDVISLGMHDYNRDNTHIWPGIPHSFLYAPPGSYYDPNNPPIIHGDGFPYIQRGHLTLARREIPMTNSVYDNLLKRIDNLEGHGPIKIRYDMGKGIIETVTFEEVWLKINPYNGDPTHILKKVSLNKLE
Ga0208063_1003152Ga0208063_10031523F013096MVTDVVGDSAVGLSTLSHTNTVAVYEPEALGVHDNAGL
Ga0208063_1004128Ga0208063_10041283F040684MKRVIYLIILAMSLTLVFSQGKPCCKNKSGKGKVACKFNQANIDVNKDGTVIEDGTQIAAVGVQCPLSAQNSSINKNNCTNCAKSPWWKFWGKKKGCCNTNS
Ga0208063_1005357Ga0208063_10053573F095626LGRTTNAQPILLSTIYDLNMDLQRRLKRLRCTAFPYFLDTISPISILELLLYLNDKSLKYRDFEAFIILENADEESECFN
Ga0208063_1007874Ga0208063_10078744F071317ASLIHLDECNMPCCAGLATSCCDMDQEVACPTMSDCGSSIFVLIVSGPFHKSEEKSSDSISRRFVTDLDIINIETNYVTSFGKYDPGPITFLNLPLLI
Ga0208063_1009581Ga0208063_10095814F050430MDKKLKENLIVGTKIVGMLFFLIVLITTLVWPGGVDTLANLCLTKE
Ga0208063_1013344Ga0208063_10133441F089571MMNMVKEKERKMLQNIIVLIISVLFLITPVSSQHVKQKYAITDKDEKVFLNDNGTWEYLGEDKQNYTLKKVPPKTYNYDSTPQTWEERMEQAAHEYWRIRAHAELDRLGISVTKYDPTTSDVPLFIKLEGGRIRTDFDPFTPLARGEVIDIAGLWNPSKGDNPTLNIHGKLFLQITMKLEDQKKLFSQYKQRNYIPIPEDFRRILKFRDSLDVISIGMHDYNRDNTHIWPGIPHSFLYAPPGTHYDPYNPPIIHGDGFPYIQRGHLTLARREIPMTNYEYDNLLNHIDKLEGYGPIKISY
Ga0208063_1015735Ga0208063_10157351F084703DAVEVLPSSLPQGLFSTTDPCFLPGKLEPLGFSPPGQLRVAS
Ga0208063_1019093Ga0208063_10190933F087736MMKTVAMMQVMTITGRPTLAHSAVVIGLGPRSLMATVITLALEPMGVALPPNPAPMARAQ
Ga0208063_1022095Ga0208063_10220952F052870IIIGLLDEFITDLILSEKPKFSFEILSLSIDIDPIFFKYIPKNGILNNSFFKINTGELKMVCKKNVSNIDWXEHAIKNLPSDMRFSFPLIIIFVDKNIFKQIFDQCPIIFPPNKTIFXGNSRDGKKIKQISIIPK
Ga0208063_1022553Ga0208063_10225533F068126MKWKFIIVMVVALVLSGCAKNVVDKNNDLGSGDKSNLPISLTSLIEHAEYCKAIYDI
Ga0208063_1022910Ga0208063_10229101F002745KSFKGYLTEFAMQSTSDYVFNAGSDSSALKIPISGPMFKRIWPDTIRTTVFHATDLKGLANLKKLEGGKKSISAFFSMMSRYMETGVATSGDVHVVVEMDADVLVSAKDDIWSQVDKTGRRWVELSWFASATRTGPKFDKVEKDLNTLITNLVKKHLTPILGKNAVVREHEYELWSNMKSHLKAGREGGGNRLRLVIKDYFDGIEKVLKKNKKVMGDIIYGYTKSKRMTDNAWDEQIVNNIKIKTVHVWKTNRDDVWGEKEIKQHITDVHKWPIKVWDAPIELEAYTREVAKKELGK
Ga0208063_1027910Ga0208063_10279101F020717SIVACTRFLALLETTQCWDFLRPHHILHENKDIRCFRDLNEQKDISISVLKLMLSEN
Ga0208063_1028315Ga0208063_10283151F020717SIVACTRFLALLETTQCWDFLRPHHILHENKDIRCFRDLNEEKDISISALELMLPEN
Ga0208063_1033077Ga0208063_10330771F076171DHSHPFNSRLEEFRNHVDLKSKKAFYQLAKIDSSQFFRVIKGFQKPGFGFFEKIANAFPDLNLSWLLIGEGEMILDRVNDAEKTILENYRKLPDEGKIGFEVRTNLYEREYLEHKELMGNIVDVAMNNENKLPFMSWELYNCLQVLQNSRVNKIISIQKKPSKMAVFDTSELKSQLKSQLENNEADIQKLISLDAEYIKEFFTNTNE
Ga0208063_1037215Ga0208063_10372151F082562LIHPILGGFGGTIGIEKNKFSYGLNSFGTKLNHMTKHYLLVNAEELAVYNWGVELYSDYYLKQNHAGIFLGLISSLNGFRFNDTPIPQTILVVYSVPRIGYRAYLPKKLKSFYFQFSLTTHFKVWNNKKKILYQEIDTKSIFLISQLTLGMKI
Ga0208063_1040529Ga0208063_10405291F002753ERFTPAVFEIESVNDIDSDRFTPAALDVSSVNDTDSVRFTPADFAIESVNDTVSVRFTPAAFEIESVNDIDSDRFTPAAFAIESVNDTDSDRFTPAAIAIESVKLTDSVRFTPAAFAIESVKLTDSVRFTPAAFEIESVNDTDSDRFTPAAFEIESVNNTVSVRFTPAVFEIESVNNTVSDRFTPADFAIESVKLTVSD
Ga0208063_1046518Ga0208063_10465181F092695LTIEGRKTAKVDGGYDGGKYIKKVNNLAIPCYSWWRGKDLNLRPSGYEFYV
Ga0208063_1047173Ga0208063_10471731F002753FTPAAVDIESVNNTVSDRFTPAAFEIESVKLIVSDRFTPAAVEIESVKLIVSDRFTPAAVEIESVNNTVSDRFTPVVFEIESVNNTVSDRFTSAAVPVEIESVNNTVSDRFTPAAVDIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAAFEIESVNNTVSDRFTPAVFEIESVN
Ga0208063_1049968Ga0208063_10499681F001625MALTISTTDWTSANVRKTLSWQAALVSKLRVYAIKVTFGSGDNYATNGVSADLKEGRISTLVAVIPTYSNISREVVYDKANEKIKILEVGGSTGSAMTELANNSSATNSKIFEFLVIGY
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