| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300025123 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0111485 | Gp0134297 | Ga0209082 |
| Sample Name | Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Cold Creek Source (SPAdes) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 495910232 |
| Sequencing Scaffolds | 11 |
| Novel Protein Genes | 12 |
| Associated Families | 12 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 4 |
| All Organisms → cellular organisms → Bacteria | 3 |
| Not Available | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater biome → bayou → groundwater |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Cold Creek Source, Nevada | |||||||
| Coordinates | Lat. (o) | 36.41 | Long. (o) | -115.74 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010851 | Metagenome / Metatranscriptome | 298 | Y |
| F010990 | Metagenome / Metatranscriptome | 296 | Y |
| F015482 | Metagenome / Metatranscriptome | 254 | N |
| F023757 | Metagenome / Metatranscriptome | 209 | Y |
| F034618 | Metagenome | 174 | Y |
| F036462 | Metagenome / Metatranscriptome | 170 | Y |
| F038776 | Metagenome / Metatranscriptome | 165 | Y |
| F046465 | Metagenome | 151 | Y |
| F059781 | Metagenome | 133 | Y |
| F065185 | Metagenome | 128 | Y |
| F091052 | Metagenome | 108 | Y |
| F103138 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0209082_1005508 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2880 | Open in IMG/M |
| Ga0209082_1024180 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1566 | Open in IMG/M |
| Ga0209082_1027879 | All Organisms → cellular organisms → Bacteria | 1477 | Open in IMG/M |
| Ga0209082_1086988 | All Organisms → cellular organisms → Bacteria | 902 | Open in IMG/M |
| Ga0209082_1139620 | All Organisms → cellular organisms → Bacteria | 717 | Open in IMG/M |
| Ga0209082_1140479 | Not Available | 715 | Open in IMG/M |
| Ga0209082_1156695 | Not Available | 677 | Open in IMG/M |
| Ga0209082_1176733 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 635 | Open in IMG/M |
| Ga0209082_1177255 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 634 | Open in IMG/M |
| Ga0209082_1186332 | Not Available | 618 | Open in IMG/M |
| Ga0209082_1242721 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 536 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0209082_1005508 | Ga0209082_10055084 | F038776 | MPKFSVDYSGLENKIYKKAYRLADVKDQLETVAFDIVRFKDHDHGADLWQVQSADDGDYIVALYNGDGEEKTAAIWNVTVMKTGGDLQVSYKGDPIVRVAASRLGIPFAELNRIPDYLPTKLAETLLNELSASAKNEVLKKYPELV |
| Ga0209082_1024180 | Ga0209082_10241802 | F103138 | EDEEKTRFLKSLLEQMGVPIDDFWTADSSLSVNQKIKLRSILATYTIQVIDDLDGHMQVYVEGEKVGEWNKCTYKLKKDLRELDPKKQLYLEMYVDCWTIFEENEEQPQE |
| Ga0209082_1027879 | Ga0209082_10278793 | F046465 | MKNWTEERIDRRSWKRLPGNPFADYDPADAIALWSLWEMPSFSVGKLVRRGPGRPRTKPTAVRSIRLPVETWQRLEKEAS |
| Ga0209082_1086988 | Ga0209082_10869881 | F010990 | SSRGRQVPRGVKRKMSNYPLRPRAPPPTTRLDFAAAIQLIK |
| Ga0209082_1139620 | Ga0209082_11396202 | F091052 | GEIKIMYTLSLIGYIMIALLLMSMVAKARPRIKEPAPGKALKTLPMGFLSRFRLQRSSFFALLTGTVFGVITGWLPLSMAGIVGAIAIFTIFIPMRYTFTTKGIAVGEGAFYPWNDFSGFVAKESSLKLNHPSLFGRLTLFIKPAEMNNVLQYVEKYVRAR |
| Ga0209082_1140479 | Ga0209082_11404792 | F034618 | MPFAKRSFTLDPHANEYLEKRAKRLKRSASAVLSELVVEAARQEARDRALESLGQNVEIPDRVVNRWLKKLGAA |
| Ga0209082_1156695 | Ga0209082_11566951 | F023757 | MPQALDWLATADQVFADDYGALRSGLLTRVFGLVVGLERIFHLDEMADLGFARLCGGRCCPSRHTIGGWRRHLAWSEVDAFCRRTCPWHLLRNEDALVSFDEHTIPRWTKQYRI |
| Ga0209082_1176733 | Ga0209082_11767331 | F036462 | SSPHYILEKEENMSQQVRLGDFLGNELEEDFASFDLTEIQQVLVNLQSTDAIDLAHAELLQQQSLRGADILTEYLGKIVKTVGYLEAKVNRTKNAVSLAYQAPEGRTTAEMKKWAGESSPEVEEVQIKLAKAKGSKLVLERKYEILIKSHHHFKDIAMGLRRTVLGYSSGTATADRVPEGYE |
| Ga0209082_1177255 | Ga0209082_11772552 | F065185 | IDCRKSDNPGKVVIIISAKDQENPLKKITNAVEITTAEFKQLVSDVQIQ |
| Ga0209082_1186332 | Ga0209082_11863321 | F015482 | MLGPRSVPDSDSVTHGDALSSRREKDRSPASDPLPLAFPMARWLSFDVEERSRFNRAQLVLDAMEVTAPRTVGALARDTGLEHHDLGEALALLEDLALVELEDDEGQELCVSLVATPEEHIGVRF |
| Ga0209082_1207217 | Ga0209082_12072171 | F010851 | AQRGPHAGRSTLRPHGATKPARAAAASPFFSTRTQYAGAFLLMPTALDWLATAEDCFADDYGSLRQGLLTSVFSLVVGLERIFHLDEMEDLGFARLCGGRRCPSRHTVGGWRRHLAWYEVDAFCRRTCPWHLIRNQDAMVSFDEHTIARWTKKFHIGKGYVTTRNKYMRCEKLFTGFDLESQRFLTVRGTLGNW |
| Ga0209082_1242721 | Ga0209082_12427211 | F059781 | VHPSERVRIVTETARAVLEERLDASVGAQTLALQQEQIAGRLRSDRIDVTQSEADVVALTLRRLAEQVADLVPSDPDPAYVEMARILGELAQTLR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |