Sample 3300023719

Overview

Basic Information
IMG/M Taxon OID	3300023719 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133482 \| Gp0296411 \| Ga0257059
Sample Name	Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_93C
Sequencing Status	Permanent Draft
Sequencing Center	University of California, Irvine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	105533188
Sequencing Scaffolds	13
Novel Protein Genes	14
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Child Gut Microbiome
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Northridge, California
Coordinates	Lat. (^o)	34.2381	Long. (^o)	-118.5301	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F043413	Metagenome	156	N
F070133	Metagenome	123	N
F078003	Metagenome	117	N
F078004	Metagenome	117	N
F078693	Metagenome	116	N
F081453	Metagenome	114	N
F087334	Metagenome	110	N
F090513	Metagenome	108	N
F091068	Metagenome	108	N
F099451	Metagenome	103	N
F101355	Metagenome	102	N
F102166	Metagenome	102	N
F105374	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F026592

Metagenome / Metatranscriptome

197

F043413

Metagenome

156

F070133

Metagenome

123

F078003

Metagenome

117

F078004

Metagenome

117

F078693

Metagenome

116

F081453

Metagenome

114

F087334

Metagenome

110

F090513

Metagenome

108

F091068

Metagenome

108

F099451

Metagenome

103

F101355

Metagenome

102

F102166

Metagenome

102

F105374

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0257059_100593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	31199	Open in IMG/M
Ga0257059_101294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15429	Open in IMG/M
Ga0257059_101409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	14284	Open in IMG/M
Ga0257059_101444	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis	13986	Open in IMG/M
Ga0257059_102121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	9941	Open in IMG/M
Ga0257059_102767	Not Available	7688	Open in IMG/M
Ga0257059_103267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	6531	Open in IMG/M
Ga0257059_103775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5723	Open in IMG/M
Ga0257059_105502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4074	Open in IMG/M
Ga0257059_105542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	4045	Open in IMG/M
Ga0257059_107477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	3112	Open in IMG/M
Ga0257059_109523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2540	Open in IMG/M
Ga0257059_111033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2246	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0257059_100593

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

31199

Open in IMG/M

Ga0257059_101294

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

15429

Open in IMG/M

Ga0257059_101409

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

14284

Open in IMG/M

Ga0257059_101444

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis

13986

Open in IMG/M

Ga0257059_102121

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

9941

Open in IMG/M

Ga0257059_102767

Not Available

7688

Open in IMG/M

Ga0257059_103267

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

6531

Open in IMG/M

Ga0257059_103775

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

5723

Open in IMG/M

Ga0257059_105502

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

4074

Open in IMG/M

Ga0257059_105542

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158

4045

Open in IMG/M

Ga0257059_107477

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

3112

Open in IMG/M

Ga0257059_109523

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

2540

Open in IMG/M

Ga0257059_111033

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

2246

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0257059_100142	Ga0257059_10014251	F078004	MSTPFYNNIIFFQITVFYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF
Ga0257059_100593	Ga0257059_1005937	F091068	MNEKNQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMKPAKEEQTANVPRMDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE
Ga0257059_101294	Ga0257059_10129412	F043413	MTERELREKLQSAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKMASVTDYPPPSGLTPEYMSHLVTLNEAYDGDLLTLSVNDLVFDGTTVDVAMNVQPKAGKQVFMDMEVTAECAGRAYTLEIEGCGGGDFMSGMFLPDGTDSWSDSPFGFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWKVEYLPDAQYQALLAGGADTLEAYVQNNWRQQIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGETDSGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGERWDACHPDAEKGFTLELQE
Ga0257059_101409	Ga0257059_1014098	F070133	MKRLLGLLMAVMVMMGGMAGAEASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEQIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTIKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE
Ga0257059_101444	Ga0257059_1014449	F105374	MKKRVALLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGEGASSCRDPRVVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP
Ga0257059_102121	Ga0257059_1021212	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRFSPLLAITFLYHPKDFFLCRAAALFEYREKHQ
Ga0257059_102767	Ga0257059_10276713	F099451	MRIDKIKTVGQLRKVIENLSDDYEIEMRVRRKLSDEEIKELHNKYGRIYPYPYETQYSELEFDDRGVSDKVLCLGVEIKEN
Ga0257059_103267	Ga0257059_1032671	F078693	MVLAPVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGYSPLSDPEGEVEVEKC
Ga0257059_103775	Ga0257059_1037754	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDASGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPCTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKISGQ
Ga0257059_105502	Ga0257059_1055021	F090513	MEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGLAAAFVPYMLSFTYIHLLI
Ga0257059_105542	Ga0257059_1055426	F026592	PQGIAALAAQGGVATLTERSDATFSVGQFSSADRE
Ga0257059_107477	Ga0257059_1074771	F101355	MAFWFIQWYLPSAQPPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFSKYCLTI
Ga0257059_109523	Ga0257059_1095231	F081453	MFPFFLFAGENIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ
Ga0257059_111033	Ga0257059_1110333	F102166	PEMRVFVMKKLLSLLLVLALALVPMLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV

Scaffold ID

Protein ID

Family

Sequence

Ga0257059_100142

Ga0257059_10014251

F078004

MSTPFYNNIIFFQITVFYVPAVSRRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF

Ga0257059_100593

Ga0257059_1005937

F091068

MNEKNQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKAKRQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMKPAKEEQTANVPRMDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE

Ga0257059_101294

Ga0257059_10129412

F043413

MTERELREKLQSAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKMASVTDYPPPSGLTPEYMSHLVTLNEAYDGDLLTLSVNDLVFDGTTVDVAMNVQPKAGKQVFMDMEVTAECAGRAYTLEIEGCGGGDFMSGMFLPDGTDSWSDSPFGFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWKVEYLPDAQYQALLAGGADTLEAYVQNNWRQQIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGETDSGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGERWDACHPDAEKGFTLELQE

Ga0257059_101409

Ga0257059_1014098

F070133

MKRLLGLLMAVMVMMGGMAGAEASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEQIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTIKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNENVRDAACIGQTAYMRIRLTNEKSEILLYDITQQKITDSQTLLAVDDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE

Ga0257059_101444

Ga0257059_1014449

F105374

MKKRVALLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGEGASSCRDPRVVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP

Ga0257059_102121

Ga0257059_1021212

F087334

MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRFSPLLAITFLYHPKDFFLCRAAALFEYREKHQ

Ga0257059_102767

Ga0257059_10276713

F099451

MRIDKIKTVGQLRKVIENLSDDYEIEMRVRRKLSDEEIKELHNKYGRIYPYPYETQYSELEFDDRGVSDKVLCLGVEIKEN

Ga0257059_103267

Ga0257059_1032671

F078693

MVLAPVRGAERFYVKWNCSLLMSKENQKTTSDFDALDPRERGYSPLSDPEGEVEVEKC

Ga0257059_103775

Ga0257059_1037754

F078003

VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDASGAEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPCTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVARLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKISGQ

Ga0257059_105502

Ga0257059_1055021

F090513

MEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGLAAAFVPYMLSFTYIHLLI

Ga0257059_105542

Ga0257059_1055426

F026592

PQGIAALAAQGGVATLTERSDATFSVGQFSSADRE

Ga0257059_107477

Ga0257059_1074771

F101355

MAFWFIQWYLPSAQPPQPKGAGAVFPYVLPLCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFSKYCLTI

Ga0257059_109523

Ga0257059_1095231

F081453

MFPFFLFAGENIIEKHISANPVCGTNIRAPELAVKGAPGRKCIQ

Ga0257059_111033

Ga0257059_1110333

F102166

PEMRVFVMKKLLSLLLVLALALVPMLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023719: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_93C

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences