NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023442

3300023442: Hydrothermal Fe-rich mat microbial community from Rainbow Site, Mid-Atlantic Ridge, Atlantic Ocean - 664-SC8



Overview

Basic Information
IMG/M Taxon OID3300023442 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0133538 | Gp0295820 | Ga0256751
Sample NameHydrothermal Fe-rich mat microbial community from Rainbow Site, Mid-Atlantic Ridge, Atlantic Ocean - 664-SC8
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Delaware
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size389358363
Sequencing Scaffolds16
Novel Protein Genes20
Associated Families17

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1
Not Available9
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHydrothermal Fe-Rich Mat Reference Genomes
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Surface (saline)

Location Information
LocationInternational: Rainbow Site, Mid-Atlantic Ridge
CoordinatesLat. (o)36.229322Long. (o)-33.902767Alt. (m)N/ADepth (m)2294.86
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000226Metagenome1525Y
F008223Metagenome / Metatranscriptome337Y
F029294Metagenome189Y
F039145Metagenome / Metatranscriptome164Y
F039667Metagenome / Metatranscriptome163Y
F046955Metagenome / Metatranscriptome150Y
F059060Metagenome134Y
F064624Metagenome128Y
F064726Metagenome / Metatranscriptome128Y
F071270Metagenome / Metatranscriptome122Y
F081350Metagenome / Metatranscriptome114Y
F087396Metagenome / Metatranscriptome110Y
F088919Metagenome109Y
F093968Metagenome106Y
F102416Metagenome101N
F105196Metagenome / Metatranscriptome100Y
F105886Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0256751_1017619All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2591Open in IMG/M
Ga0256751_1027979All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2046Open in IMG/M
Ga0256751_1041135All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1694Open in IMG/M
Ga0256751_1096532Not Available1113Open in IMG/M
Ga0256751_1099978All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea1093Open in IMG/M
Ga0256751_1143987Not Available916Open in IMG/M
Ga0256751_1179597All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae820Open in IMG/M
Ga0256751_1183734Not Available811Open in IMG/M
Ga0256751_1189160All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium799Open in IMG/M
Ga0256751_1232532Not Available720Open in IMG/M
Ga0256751_1260447Not Available681Open in IMG/M
Ga0256751_1260529Not Available680Open in IMG/M
Ga0256751_1280545Not Available656Open in IMG/M
Ga0256751_1294295Not Available640Open in IMG/M
Ga0256751_1302144Not Available632Open in IMG/M
Ga0256751_1313220All Organisms → cellular organisms → Bacteria621Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0256751_1017619Ga0256751_10176191F071270MADAYSLAKAHLEKGVSEAKENNIDANAYGQALIWKVLEMYQANGRSGSDIVSEVQYTLENLDDDGTFHVSRN
Ga0256751_1020003Ga0256751_10200033F088919MYVEEICLSAAVADLDEDQPPDEQIIATLEQASGLRRCQSEFTLLSNHRLSVKSQGFMQKTRDYTVDIGILDPQPRRVLNICWGNLLNFVVLCGAIWAFALADLASNTVLLPLILGVFAGLSLILAVYRSHDRLVFYSQYGRVPLVVLFNRSSDRAELGSFTDTLVHHIKDAKVHHPDVNETLSEELKAHRRLMEAGAISSKRYDLVKQRILSQHG
Ga0256751_1027979Ga0256751_10279791F093968MTHGDGLPRFSALSVRCGDAGHREACATPSESLGK
Ga0256751_1041135Ga0256751_10411352F105196MYIIDQCRGPYGQLSKSRKTLLEQLLKQPDQCIWERARGLIIRDIPIVTMEMAVNSVRRNSDAEQLPDPFTLYRALRFAVDYETGDAESVRGGICRK
Ga0256751_1096532Ga0256751_10965322F029294MQEIGETRDAIIEDDNKKIEEIVNANKNRKEPYWIVLFAKPSKISIDGKPTLIKHIKAYYKRPVSQVGMVIGEVNNAEGTVKWEVNMPQRPFDYDALITLGAKETKEVIVETTSIPYAYVTK
Ga0256751_1099978Ga0256751_10999782F039667MAFYGVGCEVKVKELLLQIKMQIQNKPGRGIRYLKVIFRRYDENGNKKLDPVEFEECLNAFG
Ga0256751_1143987Ga0256751_11439871F064726MVATQEVAAQETGNERKYRSPNRILVRSFRISRDKWKLKYMDTRADLKRERQRGTERGDSRDRWRAECEAAKEQARAAEAVAQERLVELEQLRASEAEVKTTLLANAS
Ga0256751_1149610Ga0256751_11496102F105886ADVRESIELELWDSMVEVDTKLRSDANLDGNCTDSTVGSATVSTIDMGGALYRAATIPFEIQIYEEITITP
Ga0256751_1179597Ga0256751_11795971F102416MGEVATTGEISMGENDWGMISKNPPMYESGVDNAVIEVTDTENKTHKITFKKGGVLNLGREGDTLYLAWDDADTKF
Ga0256751_1183734Ga0256751_11837342F105196MYIIDQCRDPYGQLSKSRKTLLEQLLKRPDQRIWERTRGLIIRDIPIVTLEMAVNSVRRNSDAEQLPDPFTLYRALRFAVDYKAGEAASVGGGICRK
Ga0256751_1189160Ga0256751_11891601F039145MKNYLTSLFVSLLLLSGCSQEGVQAPVEISAFIEELKANGVDGTLLIRAPFNEDMEYIAEYEIARYASTRIISLFKFKDAEKAEVNLQEALRNEKLSGQAVNGRFVMAVT
Ga0256751_1232532Ga0256751_12325322F059060MISFYTAGKIWHAPKFRELRDKGLNVRARWIDLDNNSDFVLYKKDELWQQCYEDVRDSDF
Ga0256751_1260447Ga0256751_12604471F008223LRIFGKLFRGKPRPPSPTEELGRILDRFTTATIMGIDREDLGRYPSKQHKVMAFHFGAIKYLAGQFGLDETETLGVFVTFIDKYFNMPVTETGSISERLQGFQDNKEERAYLDAGLDVFRRWHEQDERRAPLELGEMLKSL
Ga0256751_1260529Ga0256751_12605292F046955STIPSGDLPVLAGSVLSINSSGDYILGVGTGKVMPMFSFNNSDDADVANEGGDPASDVGAFVPLVPTGNAMALVAVGAYELLSTAFVSASYAPNTALTAAISGVANPGKLKAGTMYTDMIVGIVSRGVVDNGYGHNALAFWPCPVFPT
Ga0256751_1274383Ga0256751_12743832F088919GILDPKPGRSLKICWSNFLLFIALCGAAWAFLFTGLALKTVLLPLVLGVCAGLSLILAVYRSHDRLVFYSQVGRAPLVVLFNRSPDRVTFDSFTDTLVQHIKDAKAHCPGANETLREELKAHRCLMQEGIISSKRYDLVKQRILNQHS
Ga0256751_1280545Ga0256751_12805452F064624MTQQQPPVPGQVQITADDFNSLMQVDELTRVKVHNIALQRRNAELEAENAELKAQIAEPDTTTTNNKNDSKLTAVGAD
Ga0256751_1294295Ga0256751_12942951F081350MTKIRSTRARSTCALLVWTIAWVASEAHAKSPFLYGGEPVHPACVHALTMNQGDAVPVTTAVSLEGCSSSERSKSRVHYVKDVATFEDDALLGGGSFGYREITQLDNGIYGLAILRVLPDGEERVSLAAIRMIQRPMIRQGNIVQLQLIELLGEVWIPDIEMLSFRSVGNVVEFSAGVGPKKVHRKVDFTRIGKMRK
Ga0256751_1302144Ga0256751_13021441F039145LILLTGCSQEGVPAPAEISAFIEELKENGVEGSLHIRAPFNADMEYVAEYTISRYASTRIISIFKFKDAEKAEVNLQESLGNDKLSGQAANGRFVMAVTFHPPDEAAVEKIKSLFLAHGF
Ga0256751_1313220Ga0256751_13132201F087396TLHLDGFVLDEPTLVNSRVLPYVQMVASALERRTISREELITALRKRMRQRSIGRLPHREYVLRYLNQHPP
Ga0256751_1313518Ga0256751_13135182F000226MKDRTLKALPEYLQPKILSAVAYVNECAPNLNKAVERINTVREQLSEKEVMWVMSLLTFEKLLDLVKDSDEFGKYTSAMKARTLQXYIAKVQSVMSIKLKIE
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