NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019729

3300019729: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_4-5_MG



Overview

Basic Information
IMG/M Taxon OID3300019729 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0217634 | Ga0193968
Sample NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_4-5_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size123555323
Sequencing Scaffolds37
Novel Protein Genes39
Associated Families37

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina ovata1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
Not Available14
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_311
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Thalassotalea → unclassified Thalassotalea → Thalassotalea sp. ND16A1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium1
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon1
All Organisms → cellular organisms → Bacteria → FCB group1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001488Metagenome / Metatranscriptome686Y
F004052Metagenome / Metatranscriptome455Y
F004928Metagenome / Metatranscriptome418Y
F005815Metagenome / Metatranscriptome389Y
F005819Metagenome / Metatranscriptome389Y
F006847Metagenome / Metatranscriptome363N
F010065Metagenome309Y
F016667Metagenome / Metatranscriptome245Y
F020094Metagenome / Metatranscriptome226Y
F021962Metagenome / Metatranscriptome216Y
F024001Metagenome / Metatranscriptome208Y
F026445Metagenome / Metatranscriptome198Y
F028777Metagenome / Metatranscriptome190Y
F029006Metagenome189Y
F035554Metagenome / Metatranscriptome172N
F042602Metagenome / Metatranscriptome158Y
F044506Metagenome / Metatranscriptome154Y
F045104Metagenome / Metatranscriptome153Y
F054044Metagenome / Metatranscriptome140Y
F059980Metagenome / Metatranscriptome133Y
F063202Metagenome / Metatranscriptome130Y
F070128Metagenome / Metatranscriptome123Y
F071259Metagenome122Y
F074892Metagenome / Metatranscriptome119Y
F076890Metagenome / Metatranscriptome117N
F077317Metagenome / Metatranscriptome117Y
F082730Metagenome / Metatranscriptome113Y
F082775Metagenome / Metatranscriptome113Y
F085725Metagenome111Y
F088283Metagenome / Metatranscriptome109Y
F090406Metagenome108N
F092076Metagenome / Metatranscriptome107Y
F093218Metagenome / Metatranscriptome106Y
F095003Metagenome105Y
F099318Metagenome103Y
F103280Metagenome101Y
F103358Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193968_1001336All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina ovata2246Open in IMG/M
Ga0193968_1001934All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1944Open in IMG/M
Ga0193968_1003241All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1590Open in IMG/M
Ga0193968_1006482Not Available1230Open in IMG/M
Ga0193968_1006516All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1227Open in IMG/M
Ga0193968_1009614All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1058Open in IMG/M
Ga0193968_1014907Not Available895Open in IMG/M
Ga0193968_1016968All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon853Open in IMG/M
Ga0193968_1017640All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis840Open in IMG/M
Ga0193968_1020929All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria786Open in IMG/M
Ga0193968_1023994Not Available748Open in IMG/M
Ga0193968_1025230All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales734Open in IMG/M
Ga0193968_1025618Not Available730Open in IMG/M
Ga0193968_1026110All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium SG8_31724Open in IMG/M
Ga0193968_1028992Not Available697Open in IMG/M
Ga0193968_1031406All Organisms → cellular organisms → Bacteria → Proteobacteria677Open in IMG/M
Ga0193968_1036348Not Available641Open in IMG/M
Ga0193968_1037083All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Thalassotalea → unclassified Thalassotalea → Thalassotalea sp. ND16A636Open in IMG/M
Ga0193968_1038508All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium628Open in IMG/M
Ga0193968_1038619All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica627Open in IMG/M
Ga0193968_1038994All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium625Open in IMG/M
Ga0193968_1039364All Organisms → cellular organisms → Bacteria623Open in IMG/M
Ga0193968_1041479All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium611Open in IMG/M
Ga0193968_1041981All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis609Open in IMG/M
Ga0193968_1045135Not Available593Open in IMG/M
Ga0193968_1046047Not Available589Open in IMG/M
Ga0193968_1050208Not Available572Open in IMG/M
Ga0193968_1050323All Organisms → cellular organisms → Bacteria571Open in IMG/M
Ga0193968_1051991All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon565Open in IMG/M
Ga0193968_1053575All Organisms → cellular organisms → Bacteria559Open in IMG/M
Ga0193968_1056256Not Available550Open in IMG/M
Ga0193968_1056561Not Available549Open in IMG/M
Ga0193968_1066929Not Available518Open in IMG/M
Ga0193968_1067185Not Available517Open in IMG/M
Ga0193968_1069261All Organisms → cellular organisms → Bacteria → FCB group512Open in IMG/M
Ga0193968_1071037Not Available507Open in IMG/M
Ga0193968_1071564All Organisms → cellular organisms → Bacteria506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193968_1001336Ga0193968_10013364F045104VLFDTLTQHQRALTLANTALAHTTLLDWLVEQNAHLVIPDTLLAAPCLNQASRIPVAVWVAPSPLLEAIRLAAGLTTRPPKQTAALLARWPTAPALRPFLRRLIASRIPDQLSLL
Ga0193968_1001934Ga0193968_10019343F001488MARLELTLNFPKSFQIKTFNVKSEKTLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPVERDFLLQALYSTVISLQNNLSINFFDMWIYEIYINKVSTHNKFMSQKSQNLEPGEYITIKLAYGSSVSQEKK
Ga0193968_1003241Ga0193968_10032414F004928MSQALHSIESEPNHTVEIVVHITETLGEQQRGDLVAALEGNVGIATAEFCPLRYHLILVRYDRDLYSSQDVLERVTSHDVSARLIGPV
Ga0193968_1006225Ga0193968_10062252F076890LVSACSTLDFEDYCRYSDEHSIREADPESLALVLGVKRGLARETPFVVVRSLSEHNRGAVIKLNATAAPHPIPMSLDESRCAAVDWNTYTLTVDEGEWNAFWSDDRNSPFEIAIAFLDNNESLLVSKFGAAIVDTDAADYLVSCGCYWK
Ga0193968_1006482Ga0193968_10064821F082775MSEPDILYPAIFVFSMLLIGLLLTMWEFSRLYKRQQQKVERDKRFTGLDSRVYRD
Ga0193968_1006516Ga0193968_10065161F026445VNIDQAKPKRQKRTITLYLGNTLGEYEATYLTETGLKALIRRVETADSINWGCLATGHEAGCPRQLHFTHHDSYSRWVKHFNGTQSVVVIHRVRCLDCGAVFSVQPSFLIRYKRYDTDATEKLMTLLFITEDSYRMAGVSQTLALDDQQAGTWAALEIHQAHAIQPLALWRLVQWLGQLSPAQLNLALGVEPPQIIIEDEKHATECGQKSYIPLVYAPKEALIWWVDYLHSVSEADLTASLERFKAISDRLVDIIGATVDGWEAAQNALQATFEGITLVECHFHALLKLGQHLATYKRQRKQAGQPLSETEEIAIRAAFWRVLKATTPEQYQQALDQLPEAFEQEPLASRKQSLIEKQALFLAWTTDQRLAVVTTAL
Ga0193968_1009614Ga0193968_10096142F035554MAAKFLEDYVGVDDLIKQMNEQYPEGRLVSEIVEKTDKMVVFKTSFYTKDNVSPKCTGHGSKYSTEDHWLEKAEQKSRGRCLRVLLGSEPTAEEMEGIVPSKTATPNKKSLDEKVKDLEAEGLVEDISDKTQAIMDNIKDFAMEITNQDLDLARNYTAQALGSMGMSKTEVSINNLQSVKNKIQDIATMARTEIDKGE
Ga0193968_1009614Ga0193968_10096143F028777MLGIFGRNKPLSTFEIISLEKNISEAKKIRYILEVEGFICTLDKEFSASGNLRKVVHRLNNSYNLSIYKEECNCDNKQK
Ga0193968_1014907Ga0193968_10149073F004052TIALFSMTALLCACDQRHTASGVDPELGRECFESHRAALPPGSQYEGIEALAGSRLTIRVMNGVEVVTLACELNPDGTLRSAVE
Ga0193968_1016968Ga0193968_10169681F103358SSIGLTTLPLVSVRLNSGSLDAVVLPQIVKVLPTTGQDYIITLVRNATLTSPSWDTSTFTNVDYDVSATAMTGGEIVQLDYITNTVQAGSGVDAPTGYKFSLQLGRTIGGTSDIMTVGIRTAVTGTPSGSAIGSLIFYDLTNGV
Ga0193968_1017640Ga0193968_10176401F090406MKGERKTFWLIIALVGLASCSTTLTSVDEEGGNVYALPPTVVDQMLKDAMSTEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIIDGYVFEVSRKGTAPATGEPTVKRIFAKLQKDAELTGTGAAFVEFTD
Ga0193968_1020929Ga0193968_10209292F054044MNCRNFDRLNSLPADRLGISSTAGILVLGLAITALIFLFLDSSFRSAADQDECLQLVRALGLNSLSLVPSGRPLRNPGAMDPSIDLRFDPRLGRIHLDGADFVLKVSD
Ga0193968_1023994Ga0193968_10239942F085725MNLLFATAFLLISAVAVGFYLVFLGQRQRKRSPGLGLTHASLALSGIIVLFTEIFTGPTDKLNNVAALFLFFAIVGGGMVFALHEENRPPSMVAVTVHAIMGLFGISLLIINLF
Ga0193968_1025230Ga0193968_10252301F020094YVITINLSPTNTLINVKTIKGNPRFFYSAGMCNLQKKQKIRQPKAIITILRALLLKTKLFKTKPVAVHFNNLFFNHQTYILKKLKQKIFTKLVTSYTCFSHNGCRLKKKKRIKIRTRKFSKE
Ga0193968_1025618Ga0193968_10256182F005819LPNQQQVGESNIDFKRFQYYLGLGASRSYEKVSNNFTITDRRVKQIAVKNQWQDRIKAINKMLNEQIINEVLAQVGETARDIADELKPLIFKIINEINERDLASMNPTELKGILDICYKMISQIYGLGNPQVQVTQIEYPQIKFKWDWEQDDEPDY
Ga0193968_1026110Ga0193968_10261102F074892MMKKYAVIALFGLLLSACSERGEDVYRTWVGPDRSNMAIVTLRLGDDIRDVTIRERVLPRSEYGTILLVPGQYTLYEHDGASIGISIRPMLVNVEKARANGELILGHTYVLHAGKSKETGERALWIEDARSGEVFVDRR
Ga0193968_1028992Ga0193968_10289922F077317MEELLIKSADETVWYENDQPIKEFLESFRKPAILDADQPAEELSWLKILEKSIQT
Ga0193968_1031406Ga0193968_10314061F071259MKRKQSRIIVGTAISAAVIAVAIDHTRQRLPRAEKQLASQDAGIIIDEGEELPAENSDDCGKPAGRGRQASPCSL
Ga0193968_1036348Ga0193968_10363482F099318VIIPISEEVRIVGTERCWELQRLRNYKGGKRWEAYKWFATFRQALDEAVHREIRLHPAGNLADAIEGVSAILRRVSALIPPGYR
Ga0193968_1037083Ga0193968_10370831F005815MTMNVTRLTTYWTIDEAATAIEFLDRLRDALWETYGEQITEMHRETHDNRFQDINQCELGFDDDIPF
Ga0193968_1038508Ga0193968_10385081F044506MGFGMMQYLINGPATGGIKDKIKMVNILLKTNNPSFHPSIIPFPGKIRRPQKTSIFSVG
Ga0193968_1038619Ga0193968_10386191F021962KTVWFREQIVLRGINLIKIETLEQLGDMFTKGLGKIPFEYLRKKLMGW
Ga0193968_1038994Ga0193968_10389941F088283LLLLLAFTAGCAADTNVAGTYQPSCIAFEGNTIELSEGRFTWDKFTDEVRIDEDGNKVDPFPGFPVRGTYVVEDDVVRLTTDVGELAGEMHLVRRPDQVYLLTGEEFGSWQRDGEVPTCALLLGSDE
Ga0193968_1039364Ga0193968_10393642F059980MEEAGSMGFSGGFEQGKPETALPELIRFIPGNVKGVNPQNKF
Ga0193968_1041479Ga0193968_10414792F093218LPGWWKKCKDSCKYLGASLAILLVKRKLGRRPNDWSLWFTLGRLYGVGYQWPQAIDALKNARKLDPHNEIIAQQLSQTKEAAKQDSAAKL
Ga0193968_1041981Ga0193968_10419811F090406VDGKGGNVYALAPTVVDQILKDAMSTEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIVDGYVFEVSRKGTAPATGEPTVKRIFAKLQKDAELTGTGAAFVEFAD
Ga0193968_1045135Ga0193968_10451353F016667MKINKNLRTALITIALVGTSYGLGKQQGEQTILDRWENRWFDSDWYDKQSIEDILLDTDYSIELGE
Ga0193968_1046047Ga0193968_10460471F092076MFNYKIDKLQGIIFTRVSGTPTTVLMIDHIQNVMNDPDFDTNNNSIIIVEENTIIIGVPTNKIETIRRVFDGFAQQGKGRNCAVVAPNKRLEAFLKLNLELISPVILNYRIFLNEDDALTWIKEQ
Ga0193968_1050208Ga0193968_10502081F103280MQNIMKKLVGFLTVSSIWLLPVVLPEIQAQQTATPPSTAALSPGTTIEELKSRRIAIESMTGIDATVKAASLKYIDGAITYLGLAGSATKEANELSKLIQKAPERLKKMQAELKKPF
Ga0193968_1050323Ga0193968_10503231F024001AILGVEAPGRQGAKTQEYLDIPSFRNAARRDASASKM
Ga0193968_1051991Ga0193968_10519912F010065AIVRGESGISFTGLYICGVISLVMLVLKLSVMDAWSWWRVMLPVGLIVGFTVTNMVVAFIYLSFAHIPERPDGDEAELLEPHTINVHYVAAMLFFVVFGDNVVRWIDGSETSYWFWLMSGKVEVLAAFGVLSVLALFAYWLRLGRVLKASD
Ga0193968_1053575Ga0193968_10535752F042602MNHWNYDVNEKLFSLRWDIDHRACITDGLPKIMEVCDELGVANTFFVNMGKSTNLREWIGKGFSGSRAKLTDTESVNLIE
Ga0193968_1056256Ga0193968_10562562F095003FLAGLLSGAGIGWYSGILRERIRQTDPEKSKREPIIYRHLLEKAGLSEEKDKAG
Ga0193968_1056561Ga0193968_10565611F082730KSMKKSEIPSTPKLKFKFKKGIHNNLLTNXKELIDLLKKTHKNNESTYMIQDIFKAMFFNNEQLDAGTSNKKKTPSKGNSNIKTSKLVTVGGEKSNINTL
Ga0193968_1066929Ga0193968_10669292F070128VPIRKIGMTIAVVMLLIGGFGSLAAGELDATAIMALSLASSLILLDRAGKPAPRSVRAIVGFALLATAVGAALVMVY
Ga0193968_1067185Ga0193968_10671851F004052AKHSILPFSHNRWEHPGMRIFTSIVQLAMTTLLLSCDQRPSAYDVDPRLGRECFESHRASLPPGTQYEGIEKLAENRLTIKIMNGVEVVTLDCGLKPDGSLQSPAK
Ga0193968_1069261Ga0193968_10692611F063202MTMDQVWEKLKSGFNVVEDEEGSFYISDKHSEPVGIIFFKDEIAVKIIKEWGTTNKSNVGQVFKILWNILKQYEKDLDTVKLIPLETFTPKGSKYALQIYLTENKFIDITIQHSVTILEVLEEPDLLSEAIHQRSI
Ga0193968_1071037Ga0193968_10710372F029006MNKVIIALMAIYFMGDPGLQYLAWLGELKVYIVAAAIALVSMPWIASQLDG
Ga0193968_1071564Ga0193968_10715641F006847MGELLMLFITGGGSTAMGAILKGVFGYIFEAKQNKHDLEMAREARASDNFLRLQAEIAKGGTGEFVSFTRRILAVIGVSTLCACIILCTLFPSAEIVTLTNADGEGINEIFFGLISWQATQEPLTISSGHISLMGCTVILPCI
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