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Sample 3300017650
3300017650: Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C Kraft BY (version 2)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300017650 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0127392 | Gp0191746 | Ga0182736 |
| Sample Name | Enriched backyard soil microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C Kraft BY (version 2) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 529761033 |
| Sequencing Scaffolds | 5 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Variibacter → Variibacter gotjawalensis | 1 |
| Not Available | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
| Alternative Ecosystem Assignments |
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information |
| Location | USA: Emeryville, California |
| Coordinates | Lat. (o) | 37.83 | Long. (o) | -122.29 | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F027578 | Metagenome / Metatranscriptome | 194 | Y |
| F033176 | Metagenome / Metatranscriptome | 178 | Y |
| F040613 | Metagenome / Metatranscriptome | 161 | Y |
| F052674 | Metagenome | 142 | Y |
| F097858 | Metagenome / Metatranscriptome | 104 | Y |
| F102635 | Metagenome / Metatranscriptome | 101 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0182736_1004613 | Ga0182736_10046133 | F097858 | MSTQQTTCAIERAAATSVAPAPAANLILGTLLLLIRP |
| Ga0182736_1070383 | Ga0182736_10703831 | F102635 | KAECVYHLLREIVEDVPSVQITTRMPDNLTEEQLSMLTESIRQAALKGIEVAMTHSVQVLMSSIYDLCTSKLKVRPS |
| Ga0182736_1101140 | Ga0182736_11011402 | F040613 | LFDAADGCKLVFERGALLHQPLRLLRVVPERGVFGELVQFRQSRARLIEVKDASSAVRPT |
| Ga0182736_1180416 | Ga0182736_11804162 | F033176 | MDPKLTILFMLIGAVIVLSHISDGHFARVRRQFVQRRWRAIMPARRRS |
| Ga0182736_1219756 | Ga0182736_12197562 | F027578 | MDRRSLFGLTAAAGGLLAARTVLPANAQATGPAHHGEPKLEPLPKIAQQQQFRIGYTTNTRGGWESDVFLGISEGREIGFRYFEIFGASFCATPNGMNAPPRDKQPMKAWPDGYSWKYDSVKVTKREVYYADRW |
| Ga0182736_1229963 | Ga0182736_12299631 | F052674 | MAASLPMLGSAAVFAAEPGKSLLPLNTPKLDHLDVMVPNVENTARFYMSVFKTSLHAQPFQGGQRYFVLLGDLPENRQVGYIAVGDSRGRGTYIGHFCTSVFNYRENAAAITQQLTQIYERAGFGDFASAGRGRVG |
