NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014706

3300014706: Human colon tissue microbial communities from Howard University Cancer Center, USA - CC0995



Overview

Basic Information
IMG/M Taxon OID3300014706 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121343 | Gp0152888 | Ga0135354
Sample NameHuman colon tissue microbial communities from Howard University Cancer Center, USA - CC0995
Sequencing StatusPermanent Draft
Sequencing CenterHiThru Analytics LLC
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size56054843
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Carnobacteriaceae → Trichococcus → Trichococcus palustris1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-4421
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → Oscillibacter valericigenes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal And Colon Tissue Microbial Communities From Howard University Cancer Center, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Unclassified → Human Colon Tissue → Human Fecal And Colon Tissue Microbial Communities From Howard University Cancer Center, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal proximal gut

Location Information
LocationUSA: Washington, D.C
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F032286Metagenome / Metatranscriptome180Y
F055715Metagenome138N
F068855Metagenome124N
F074964Metagenome119N
F078693Metagenome116N
F081453Metagenome114N
F090484Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0135354_102100All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → Lachnospiraceae bacterium2942Open in IMG/M
Ga0135354_102124All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus2923Open in IMG/M
Ga0135354_111495All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Carnobacteriaceae → Trichococcus → Trichococcus palustris1046Open in IMG/M
Ga0135354_114791All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442907Open in IMG/M
Ga0135354_115077All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii898Open in IMG/M
Ga0135354_119016All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter → Oscillibacter valericigenes786Open in IMG/M
Ga0135354_122939All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia707Open in IMG/M
Ga0135354_140618Not Available516Open in IMG/M
Ga0135354_142741All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii502Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0135354_102100Ga0135354_1021001F090484MIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGKKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKNFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYMYIKAEQFKEKIENMDISIQSLPNISITVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL*
Ga0135354_102124Ga0135354_1021245F074964MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKSICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDTNADKEKGVEAKTADWCAENVVYGSEYKSFGFTTAESLETQKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0135354_111495Ga0135354_1114951F055715LTKANEFDKINELLIERTAKKFEKASKNKLKKFLTNEKFCDKINELIRVGTAEILDN*
Ga0135354_114791Ga0135354_1147912F032286VTPVRHRALVFDARLSAGNTANYTLVTGNTRSFCRLMCLCVKWRNVKPDSKHRSLPDSALFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKRAEI*
Ga0135354_115077Ga0135354_1150773F078693MVLALVRGAERSFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPKGEVETEKS*
Ga0135354_119016Ga0135354_1190161F068855VEVQGPQARKALALQGLQAEKENENANVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0135354_122939Ga0135354_1229391F081453MSPFFLLAGDNIIEKHISANPVCGTNIRAPELAVK
Ga0135354_140618Ga0135354_1406181F026592NSISCCLRTASPQGIAALAAQGGVATLTERSDATFSVEQFSSADRE*
Ga0135354_142741Ga0135354_1427411F078693LVKWLCAPRGPERSFIKADYSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVETEKS
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