NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014573

3300014573: Human fecal microbial communities from obese patients in Germany - AS58_24



Overview

Basic Information
IMG/M Taxon OID3300014573 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121297 | Gp0151595 | Ga0134423
Sample NameHuman fecal microbial communities from obese patients in Germany - AS58_24
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hohenheim
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size111820318
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Obese Patients In Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGermany
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F026592Metagenome / Metatranscriptome197Y
F055775Metagenome138N
F078693Metagenome116N
F101357Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134423_1000085Not Available85831Open in IMG/M
Ga0134423_1000233All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii44977Open in IMG/M
Ga0134423_1000739All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides salyersiae17809Open in IMG/M
Ga0134423_1000843All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii15778Open in IMG/M
Ga0134423_1009020All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1460Open in IMG/M
Ga0134423_1034937All Organisms → cellular organisms → Bacteria540Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134423_1000085Ga0134423_100008593F101357MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYNYSNASNIHHEGGKFPSMLTIQLFNLEF*
Ga0134423_1000233Ga0134423_100023328F026489LTPKENQKSASDFDALEPRKXXXXPEKTEDSRLFGVKIF*
Ga0134423_1000739Ga0134423_100073910F055775MAQIAQQDNLVIEVTTTAKALDSDTKKKLIECIKGGTITDVILVTKEVDKKISHARVVSWLVDTAGSSPKYTIDIINANSGAVEEIALN*
Ga0134423_1000843Ga0134423_10008433F078693MVLAPVRGAERSCIKANYSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVEXXXXFFGIVKGE*
Ga0134423_1009020Ga0134423_10090203F026592CQNRLRTASPQGIAALAAQGGVATLTERSDETFSVGQFSSADWE*
Ga0134423_1034937Ga0134423_10349371F026592PQGIAALAAQGGVATLTERSDETFSVMQFLSADRE*
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