NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300013867

3300013867: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In5-11 gowning area SPAdes reassembly



Overview

Basic Information
IMG/M Taxon OID3300013867 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0095512 | Gp0111884 | Ga0181467
Sample NameClean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In5-11 gowning area SPAdes reassembly
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size72956651
Sequencing Scaffolds11
Novel Protein Genes13
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae2
Not Available5
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida1
All Organisms → cellular organisms → Eukaryota → Opisthokonta1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameClean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
TypeEngineered
TaxonomyEngineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Surface (non-saline)

Location Information
LocationUSA: Jet Propulsion Laboratory, Pasadena, California
CoordinatesLat. (o)34.1Long. (o)-118.1Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002654Metagenome / Metatranscriptome539Y
F009488Metagenome317Y
F021064Metagenome / Metatranscriptome220Y
F025062Metagenome203Y
F034461Metagenome / Metatranscriptome174Y
F038404Metagenome / Metatranscriptome166Y
F045048Metagenome / Metatranscriptome153Y
F059667Metagenome / Metatranscriptome133Y
F065766Metagenome / Metatranscriptome127Y
F068786Metagenome / Metatranscriptome124Y
F083218Metagenome113Y
F085478Metagenome / Metatranscriptome111N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0181467_100613All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae17793Open in IMG/M
Ga0181467_101278All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae10856Open in IMG/M
Ga0181467_102408Not Available5600Open in IMG/M
Ga0181467_102719All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida4882Open in IMG/M
Ga0181467_102746All Organisms → cellular organisms → Eukaryota → Opisthokonta4807Open in IMG/M
Ga0181467_105548All Organisms → cellular organisms → Archaea1945Open in IMG/M
Ga0181467_105588Not Available1927Open in IMG/M
Ga0181467_116452Not Available668Open in IMG/M
Ga0181467_116881All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.654Open in IMG/M
Ga0181467_119086Not Available585Open in IMG/M
Ga0181467_121279Not Available533Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0181467_100613Ga0181467_1006134F083218MLNVRKMHNKQAYNINKKYYDKCSCKFAFCESCYWFATILVNKFNNINHCDICKKKDIHIETILS*
Ga0181467_101278Ga0181467_1012787F038404MKAKFILTNIIFMIVMIILLTSLNTTKLSYSQSNTDFLTFENPLSGVQFQYTDEWIQEGSSLFGAEAECSRLPCMKLPEISTSVYPIVTEDFILENHLKEQISYHNTSQGYTPIALNETKIGEKKALQYVYTTKPPFLMEEISNELMNYEIYTTEGINLYKISFTAIDDENLDKYLHSFKNIINTFTITK*
Ga0181467_102408Ga0181467_1024081F059667LGLMRLTNGKTKCNEKNLFKVALLTEKPPQINSTISCPTHGIALIKLVITVAPHNDICP*
Ga0181467_102719Ga0181467_1027196F034461VLGYDFEIIYKRWKKNVVADALSRKDDDVEALFCTISIIQPDWINEARDE*
Ga0181467_102746Ga0181467_10274613F002654KGNSPEQEFKVPKLLLSEIKEVFFKYNQEIGLEAAIF*
Ga0181467_105548Ga0181467_1055482F085478MAKSYSKFNDINKLSLVWGQVLLILFLMSFLYFHNYVYAQLETTEKAGSIQVIKDLNKEVPSLNVIFEDQEVEMDPFMYSQINFTNKLDESKSNESKNNVVTKIGPANLYETQSDIDTKLTLKHGDKITLSYEKQPLTIKAYLIDYDTEDETEIYPIKQIDLSTFSIPTNSPSGFKSLEIRSFFDNDEQITYTTPVFIESITPEITPQNVNEDNEQGNDDNENSGD*
Ga0181467_105588Ga0181467_1055883F009488MAKKGSIKKVLKWVFRGFSLFFISMLFCMVFHDAMTGVSSTTGEYCAKYGFLASQDCWYY
Ga0181467_111044Ga0181467_1110442F045048IGGQCAPNSTVGLNALWKYAQNMAKKKKASLTINNATPMFSPLCTANVWLPK*
Ga0181467_116452Ga0181467_1164521F065766MADEKKDEGAGDPIKILLKEALEWQRNAMMDSFA*
Ga0181467_116881Ga0181467_1168811F068786MSEKKSDLVNSSEVKVMTEKGKDFIDIDVNRLQEEKFYRVEYEGDVYAVEKLPDGKIVFYEVVE*
Ga0181467_119086Ga0181467_1190861F025062VKKSLFTFGLLASSLVMLVIMPFLNQNNSFLNVMAQEYDKYGDSSYSQYPTDDKKYECRTGPFEGFFVSSVEFCKHIKFDDRKDNRDNRNNNQTGTQGPVGPQ
Ga0181467_121279Ga0181467_1212791F059667MCIKTNAANIKGNTKCKAKNLFKVALLTEKPPQMNSTISCPTQGIALIRLVITVAPHKDI
Ga0181467_121279Ga0181467_1212793F021064LLLKSVNGITNKIKIAENIAITPNNLLGIDLNIA*
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