NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300012002

3300012002: Saline lake microbial mat microbial communities from Tebenquiche Lake, II Region de Antofagasta, Chile - Tebenquiche 201212



Overview

Basic Information
IMG/M Taxon OID3300012002 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0126224 | Gp0175691 | Ga0153774
Sample NameSaline lake microbial mat microbial communities from Tebenquiche Lake, II Region de Antofagasta, Chile - Tebenquiche 201212
Sequencing StatusPermanent Draft
Sequencing CenterINDEAR Instituto de Agrobiotecnologia Rosario
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size621405493
Sequencing Scaffolds9
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
Not Available3
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Mat Microbial Communities From Tebenquiche Lake, Ii Region De Antofagasta, Chile
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Microbial Mats → Saline Lake Microbial Mat → Saline Lake Microbial Mat Microbial Communities From Tebenquiche Lake, Ii Region De Antofagasta, Chile

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → saline lake → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationII Region de Antofagasta, Chile
CoordinatesLat. (o)-23.138472Long. (o)-68.247194Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005599Metagenome / Metatranscriptome395Y
F013484Metagenome / Metatranscriptome271Y
F029940Metagenome / Metatranscriptome187Y
F029984Metagenome186Y
F034767Metagenome / Metatranscriptome174Y
F036102Metagenome / Metatranscriptome170Y
F070873Metagenome122Y
F081567Metagenome / Metatranscriptome114Y
F089904Metagenome108Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0153774_1000694All Organisms → cellular organisms → Bacteria35041Open in IMG/M
Ga0153774_1001608All Organisms → cellular organisms → Bacteria24263Open in IMG/M
Ga0153774_1007324Not Available10935Open in IMG/M
Ga0153774_1007995All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon10408Open in IMG/M
Ga0153774_1009893Not Available9147Open in IMG/M
Ga0153774_1024964All Organisms → cellular organisms → Bacteria4964Open in IMG/M
Ga0153774_1102889All Organisms → cellular organisms → Bacteria1731Open in IMG/M
Ga0153774_1142279Not Available1336Open in IMG/M
Ga0153774_1147397All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1298Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0153774_1000694Ga0153774_100069429F081567MRIQVRATEDAIIRLLRDGHPLPGSIVKREDETRLPVFQNVEAQPVKNFGIESPARIVVARGRKDVWFVDIKRRNGKVTLKESHDFLTLRDTLQIQYKGQKVTGWLVTTADVEDGVHDHINAHECFATARAARR*
Ga0153774_1001608Ga0153774_10016083F029984MRTNLIIDDNLKDKWWEIKREAAKLDMTIGEYFIFCHDLRKKTENKEKLVKLLDSPLSNGKSKIDAIEATKKMWKS*
Ga0153774_1007324Ga0153774_10073248F089904MSEEVPEEIKKKIFKMISTPGTDIEEIANEVNLEFDQVMEILSEEYLRSNLDYGRRLCCRF*
Ga0153774_1007995Ga0153774_10079958F029940MSSGEDSVDKETFIEKFEELSLRIEQLTEEVSKMKRKLDKRNKIDRSFGLKAIHYSQPLSFTKDVFGIGSPTKEYLLSIRAVTEQWKGRKNDFLIAIRQQEKETQQDLKALGIRIPVSNIKNLRILCREIISLLYIACELKNIEINDILREILTDVNEDGNEMMREIKNKFIF*
Ga0153774_1009893Ga0153774_10098937F070873MVWGGSLNKKGSDYLRKLRKADKIVEFLEEFKNDLKEAEKQIVSNTINIIVDHITKLSERRSKRD*
Ga0153774_1024964Ga0153774_10249641F013484MDIQIVLSDCTLSTEDQAVVEAVNEFLAWLPDDADPKPALRLAMAMLEAADVAPQDDLAQAAGYAQSRSLREYIRRLQEEGLSGLWDRPIPGRPAITTRTAVEKALFQVVLDSVIEEHMLPDDDTLAERVNQVLSEEQASEAGQVTGSMVETIRLRWEIKRPALAQRLQEAAQAEASEPEPTQLGRTRVGGAFILAVLLVETGWLKLAHLLPMAADYAVTATQWLLTAIFSVVYGIKRAFHLDDVRDIGFALLTGRGRPLTHGTFQHLRRAIPGEAAEEFYQASAELEVQSLDEGPRRISLDGHNLPRWTRLVDLEEGKIGNTGRILKAEELVLAYDLDERIWVGLRAYHGTKKLSRGLVEMVDELLDHRGSAKGPLRLFFDKGGYSGRVFLALSDEPRVHFYTPAVRYSTNVEQWEELGEEDFEEELFIFDKHADLPAEQRPAYRLADIEMSINVREDNKVVGTVTLRAVVLHDPAGETSAERWPFVMLTDDDEIEASALLNEFGDHWGQEIAHRIGKHDLHLDILPPGYVLKTHRDEQGQLQREVEFDQPAFFLSGWLRCLVFNLMSRFAQMMGGEYARMWAGTLLRKFIRRPATLYLIGKELHVVFDPFPDQDALQPLLDELNAKRTELPWLNDLVVQFSIAHDEPVHPLKEPEKRNRLFGDTWP*
Ga0153774_1102889Ga0153774_11028892F005599VKPEQASKVKSRMPTRLRNGEGRVGREAIDTSTCPIRRGSGHGTLER*
Ga0153774_1142279Ga0153774_11422793F036102MERQEMMELFKATADVNTKEGIEAYRAFAAALTTPILQKVEMDSIMRQLFTPERLGPGAQAVYPVAEDFEIPVWVLPGLGYIAQ
Ga0153774_1147397Ga0153774_11473972F034767MKKIIVATYDILVGVNATVWGGLEGAEKVGKIVKTGLSGADVVIGTSHALEDFACKDVVCGSLDVIGSVSSAVGLVVGNIPATKHLTFLTGSVTVGCRTVRYYCKKYGTFWGCTVAAGQGVKEAIKFTIKR*
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