NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008744

3300008744: Human stool microbial communities from NIH, USA - visit 2, subject 763496533 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008744 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053069 | Ga0114025
Sample NameHuman stool microbial communities from NIH, USA - visit 2, subject 763496533 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size208172635
Sequencing Scaffolds7
Novel Protein Genes12
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F026592Metagenome / Metatranscriptome197Y
F032312Metagenome / Metatranscriptome180N
F051936Metagenome143N
F064817Metagenome128N
F068811Metagenome124N
F078004Metagenome117N
F084124Metagenome112Y
F094005Metagenome / Metatranscriptome106N
F101357Metagenome / Metatranscriptome102N
F105375Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0114025_1000574All Organisms → cellular organisms → Bacteria38733Open in IMG/M
Ga0114025_1000691All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii34558Open in IMG/M
Ga0114025_1001072All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii25230Open in IMG/M
Ga0114025_1001375All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii20538Open in IMG/M
Ga0114025_1039796All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia823Open in IMG/M
Ga0114025_1044347All Organisms → cellular organisms → Bacteria737Open in IMG/M
Ga0114025_1052845All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii617Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0114025_1000574Ga0114025_100057418F064817MNIKNLFNRFRKWELELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPVHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRDYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI*
Ga0114025_1000574Ga0114025_100057420F105375MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMVSKQDGFAIYSFLFQTPDTSNGAADAMVNFAMNFTDGEANIKSINRISSNIMQITFTV*
Ga0114025_1000574Ga0114025_100057423F101357MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHILSKVWLKTNIYNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF*
Ga0114025_1000574Ga0114025_100057430F032312MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYAINDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0114025_1000574Ga0114025_100057431F094005MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGKFTRLDGKGNAIILPCTAENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE*
Ga0114025_1000691Ga0114025_100069116F084124LLFGGLNTTAKAFARAIKENTLHFHSQRNALTMLLAFLLIMAVPVLPILSASTQTAWLFAHEKIVISEDIMGAAQTRKPLKRLDLNF*
Ga0114025_1001072Ga0114025_100107225F026489GCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKRRAAPEKTEDSRLFGVKIF*
Ga0114025_1001375Ga0114025_100137512F084124LNITALAFARATKENTLPFHGQRNELTVFLAFPVTMAIACFNKLSFSTQTTTLFAPEELLYRMIFMGAAQTRKPLKRLDLNFLII*
Ga0114025_1009597Ga0114025_10095971F078004LSSRNTDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*
Ga0114025_1039796Ga0114025_10397962F051936FPLALRGKAFGFSVLQEHAVMTPVISIFFATLIIKYLYIHISIKSNYHAQ*
Ga0114025_1044347Ga0114025_10443471F026592RTASPQGIAALAAQGGVATLTERSDAAFEVCQFSSADRE*
Ga0114025_1052845Ga0114025_10528451F068811MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFRHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNGCRI*
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