NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008491

3300008491: Human stool microbial communities from NIH, USA - visit 1, subject 159814214 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008491 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0052914 | Ga0111008
Sample NameHuman stool microbial communities from NIH, USA - visit 1, subject 159814214 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size114134340
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/741
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F032286Metagenome / Metatranscriptome180Y
F042910Metagenome157N
F042936Metagenome157N
F043945Metagenome155N
F088921Metagenome109N
F097493Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0111008_100627All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes25381Open in IMG/M
Ga0111008_103366All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes6343Open in IMG/M
Ga0111008_107435All Organisms → Viruses → Predicted Viral2375Open in IMG/M
Ga0111008_118369All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74866Open in IMG/M
Ga0111008_124647All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales645Open in IMG/M
Ga0111008_128464Not Available556Open in IMG/M
Ga0111008_128549All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes554Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0111008_100627Ga0111008_1006277F043945MKHNLRAAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSPHPPGRGHAPAVVEEDLFLSGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELDYSTVPQMRWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDEEDSHLMPDMPGFFRWSAESSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNSAMYFVHDNTVWVMDYDEETSEFGEPHGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGEVE*
Ga0111008_103366Ga0111008_1033662F042910VAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAAGKISFQGLTLAPGAAIRIHHNAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC*
Ga0111008_107435Ga0111008_1074352F097493MYKFHMKNGTAYFYEHGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMGVEIAKIQHTDITFEQPTAEQLEQIQAKTYNSMTELKQHVQSVMNGDETMSQDEINAMLLLRIAEMEVAITNEQTTN*
Ga0111008_118369Ga0111008_1183691F088921HFLSSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKDINGEIYGEKNQIIVANKSAMIRDKLRSK*
Ga0111008_124647Ga0111008_1246471F026592TASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE*
Ga0111008_128464Ga0111008_1284641F042936GRVWKPKEGIMKTSEIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0111008_128549Ga0111008_1285491F032286MVKWVCQIVTHIRHRALVFDTRLFAGNTADDTLVTGGTFRFCRLMCPCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRIS
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