NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300008326

3300008326: Human stool microbial communities from NIH, USA - visit 1, subject 158458797 reassembly



Overview

Basic Information
IMG/M Taxon OID3300008326 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063646 | Gp0053270 | Ga0115311
Sample NameHuman stool microbial communities from NIH, USA - visit 1, subject 158458797 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size124919497
Sequencing Scaffolds6
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationNational Institutes of Health, USA
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F029444Metagenome188Y
F052660Metagenome142N
F076064Metagenome118N
F082887Metagenome / Metatranscriptome113Y
F105374Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0115311_101253All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii15558Open in IMG/M
Ga0115311_102711All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae7911Open in IMG/M
Ga0115311_103987All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes timonensis5485Open in IMG/M
Ga0115311_108209All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2660Open in IMG/M
Ga0115311_110106All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2161Open in IMG/M
Ga0115311_128944All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes699Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0115311_101253Ga0115311_10125314F076064LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMHRADYYSARRQIRLCAPDLKRRNETRRDPMPVLKLY*
Ga0115311_102711Ga0115311_1027111F052660MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPATAGHSRSADALPGKSNS*
Ga0115311_103987Ga0115311_1039874F105374LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPELFRPDALPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0115311_108209Ga0115311_1082093F029444MDVLGQLTGFELEDLMTWTVSNLQRPFREDFSLKKSGIIAEKGSQIFGCRFVGFDGPKKAAPFFNF*
Ga0115311_110106Ga0115311_1101062F082887MEKIKKIAKYATNILAIVSALVAGINAVEGITIPYAIQIVQIIAVVQGVIGTYLLGQKAIAEKEEK*
Ga0115311_128944Ga0115311_1289442F026592SILCCLRTASPQGIAALAAQGGVATLTERSDATFSVKQFSSADGE*
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