Sample 3300007210

Overview

Basic Information
IMG/M Taxon OID	3300007210 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0052654 \| Ga0103359
Sample Name	Human stool microbial communities from NIH, USA - visit 1, subject 764062976
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	160776829
Sequencing Scaffolds	20
Novel Protein Genes	20
Associated Families	16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Location Information
Location	USA: Maryland: Natonal Institute of Health
Coordinates	Lat. (^o)	39.0042816	Long. (^o)	-77.1012173	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F055775	Metagenome	138	N
F061388	Metagenome	132	N
F068941	Metagenome	124	N
F078822	Metagenome	116	N
F081354	Metagenome	114	Y
F087334	Metagenome	110	N
F088914	Metagenome	109	N
F088920	Metagenome	109	Y
F088921	Metagenome	109	N
F089054	Metagenome	109	N
F090514	Metagenome	108	N
F099406	Metagenome	103	N

Family

Category

Number of Sequences

3D Structure?

F026592

Metagenome / Metatranscriptome

197

F042936

Metagenome

157

F044554

Metagenome

154

F047126

Metagenome

150

F055775

Metagenome

138

F061388

Metagenome

132

F068941

Metagenome

124

F078822

Metagenome

116

F081354

Metagenome

114

F087334

Metagenome

110

F088914

Metagenome

109

F088920

Metagenome

109

F088921

Metagenome

109

F089054

Metagenome

109

F090514

Metagenome

108

F099406

Metagenome

103

Scaffold	Taxonomy	Length	IMG/M Link
Ga0103359_100063	Not Available	148092	Open in IMG/M
Ga0103359_100071	All Organisms → cellular organisms → Bacteria	137831	Open in IMG/M
Ga0103359_100140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	99744	Open in IMG/M
Ga0103359_100183	Not Available	84440	Open in IMG/M
Ga0103359_100247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	68724	Open in IMG/M
Ga0103359_100402	Not Available	48380	Open in IMG/M
Ga0103359_100974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	21434	Open in IMG/M
Ga0103359_101104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	19164	Open in IMG/M
Ga0103359_101196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	17652	Open in IMG/M
Ga0103359_101853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11447	Open in IMG/M
Ga0103359_102185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	9679	Open in IMG/M
Ga0103359_103197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	6678	Open in IMG/M
Ga0103359_103535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	6003	Open in IMG/M
Ga0103359_105771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3804	Open in IMG/M
Ga0103359_106078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3615	Open in IMG/M
Ga0103359_107425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2975	Open in IMG/M
Ga0103359_109751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	2289	Open in IMG/M
Ga0103359_119148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1192	Open in IMG/M
Ga0103359_122419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1017	Open in IMG/M
Ga0103359_143999	Not Available	523	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0103359_100063

Not Available

148092

Open in IMG/M

Ga0103359_100071

All Organisms → cellular organisms → Bacteria

137831

Open in IMG/M

Ga0103359_100140

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

99744

Open in IMG/M

Ga0103359_100183

Not Available

84440

Open in IMG/M

Ga0103359_100247

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

68724

Open in IMG/M

Ga0103359_100402

Not Available

48380

Open in IMG/M

Ga0103359_100974

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile

21434

Open in IMG/M

Ga0103359_101104

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

19164

Open in IMG/M

Ga0103359_101196

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile

17652

Open in IMG/M

Ga0103359_101853

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

11447

Open in IMG/M

Ga0103359_102185

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile

9679

Open in IMG/M

Ga0103359_103197

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

6678

Open in IMG/M

Ga0103359_103535

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

6003

Open in IMG/M

Ga0103359_105771

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

3804

Open in IMG/M

Ga0103359_106078

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

3615

Open in IMG/M

Ga0103359_107425

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

2975

Open in IMG/M

Ga0103359_109751

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74

2289

Open in IMG/M

Ga0103359_119148

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1192

Open in IMG/M

Ga0103359_122419

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1017

Open in IMG/M

Ga0103359_143999

Not Available

523

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0103359_100063	Ga0103359_10006351	F099406	MAEVGYNSKFEGLEVDSRLENVVQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANADSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEHVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA*
Ga0103359_100071	Ga0103359_1000719	F068941	MIGGTYAYYRWKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG*
Ga0103359_100140	Ga0103359_1001401	F068941	KISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVTKGNFKAYNASSNASGITYASSGVTTLILFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFNLYATGKNATLNG*
Ga0103359_100183	Ga0103359_10018375	F089054	MLTSGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNTYLRYPNQEINPGHKHSTYIRLKLREILEVNLTDITIIDIISLP*
Ga0103359_100247	Ga0103359_10024727	F068941	MENNKGLIIGIIGLIIVMIGGSNVTGTLTPVDSKEEGIKKDITVKANEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG*
Ga0103359_100402	Ga0103359_10040216	F055775	MAQIAQQDNLVIEVATTATALDDDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGKSPKYTIDIIKADSGAVEAIELN*
Ga0103359_100974	Ga0103359_10097415	F088914	VGRILPVYSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNPGEFIAFFAWYAAKALEMDVK*
Ga0103359_101104	Ga0103359_10110411	F042936	VWKTKEGIMNTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG*
Ga0103359_101196	Ga0103359_1011963	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENKIAHLQGQYRFNSHRYCFSAFLVL*
Ga0103359_101853	Ga0103359_10185311	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAASLFEYREKHQ*
Ga0103359_102185	Ga0103359_1021858	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESSCILCSLLRYFHILSKKLQKTC*
Ga0103359_103197	Ga0103359_1031971	F078822	FLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0103359_103535	Ga0103359_1035357	F088920	VSANLHHYPAFEAGLILHLILHLILHFSQKAAIFAPKRAFSFLFVPTLFFAGLSVLSPQTSLKISGQASLY*
Ga0103359_105771	Ga0103359_1057711	F081354	LVRENQQSSAHNFVKDFSSFLPESRRRSPLKKGAATENPLEYGKTEVQILFEPLPTTISSMELPKNFENKKLPNTLRRLAFSPFHL*
Ga0103359_106078	Ga0103359_1060783	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGANWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGADSFLFCG*
Ga0103359_107425	Ga0103359_1074252	F061388	MTDYLIARSGGYGRYSAYSELFQGFDSSGNAILHHSASGGLLGRTAKKELEGHLSRIRRYDPNMTRDQAADRLISEAMGKYSMRDRSDISDMFEGAGIGKAYPLGSGHGTNYWAGRDSGKEIFAEITSAEAAHPGSLMAIKEYFPKTYKVYQDMLKARKKK*
Ga0103359_109751	Ga0103359_1097514	F088921	LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKLAMIRYKMWSK*
Ga0103359_119148	Ga0103359_1191481	F026592	WTASLQGIAALAAQGGVATLTERSNATFSVKQFLSADRE*
Ga0103359_122419	Ga0103359_1224194	F026592	ASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE*
Ga0103359_143999	Ga0103359_1439992	F088920	HHFIFLFLAFFSFVSANLHHYPAFWAGLILHLILHFSQKVAIFALKRVILLLFVPTLFFAGLSVFSPQTSSKISGQTSLHQPWLSPYCLFKD*

Scaffold ID

Protein ID

Family

Sequence

Ga0103359_100063

Ga0103359_10006351

F099406

MAEVGYNSKFEGLEVDSRLENVVQAAPGTSSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANADSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEHVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA*

Ga0103359_100071

Ga0103359_1000719

F068941

MIGGTYAYYRWKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG*

Ga0103359_100140

Ga0103359_1001401

F068941

KISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVTKGNFKAYNASSNASGITYASSGVTTLILFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFNLYATGKNATLNG*

Ga0103359_100183

Ga0103359_10018375

F089054

MLTSGKFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNTYLRYPNQEINPGHKHSTYIRLKLREILEVNLTDITIIDIISLP*

Ga0103359_100247

Ga0103359_10024727

F068941

MENNKGLIIGIIGLIIVMIGGSNVTGTLTPVDSKEEGIKKDITVKANEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG*

Ga0103359_100402

Ga0103359_10040216

F055775

MAQIAQQDNLVIEVATTATALDDDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGKSPKYTIDIIKADSGAVEAIELN*

Ga0103359_100974

Ga0103359_10097415

F088914

VGRILPVYSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNPGEFIAFFAWYAAKALEMDVK*

Ga0103359_101104

Ga0103359_10110411

F042936

VWKTKEGIMNTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG*

Ga0103359_101196

Ga0103359_1011963

F044554

VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENKIAHLQGQYRFNSHRYCFSAFLVL*

Ga0103359_101853

Ga0103359_10185311

F087334

MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAASLFEYREKHQ*

Ga0103359_102185

Ga0103359_1021858

F047126

VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESSCILCSLLRYFHILSKKLQKTC*

Ga0103359_103197

Ga0103359_1031971

F078822

FLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL*

Ga0103359_103535

Ga0103359_1035357

F088920

VSANLHHYPAFEAGLILHLILHLILHFSQKAAIFAPKRAFSFLFVPTLFFAGLSVLSPQTSLKISGQASLY*

Ga0103359_105771

Ga0103359_1057711

F081354

LVRENQQSSAHNFVKDFSSFLPESRRRSPLKKGAATENPLEYGKTEVQILFEPLPTTISSMELPKNFENKKLPNTLRRLAFSPFHL*

Ga0103359_106078

Ga0103359_1060783

F090514

MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGANWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGADSFLFCG*

Ga0103359_107425

Ga0103359_1074252

F061388

MTDYLIARSGGYGRYSAYSELFQGFDSSGNAILHHSASGGLLGRTAKKELEGHLSRIRRYDPNMTRDQAADRLISEAMGKYSMRDRSDISDMFEGAGIGKAYPLGSGHGTNYWAGRDSGKEIFAEITSAEAAHPGSLMAIKEYFPKTYKVYQDMLKARKKK*

Ga0103359_109751

Ga0103359_1097514

F088921

LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKLAMIRYKMWSK*

Ga0103359_119148

Ga0103359_1191481

F026592

WTASLQGIAALAAQGGVATLTERSNATFSVKQFLSADRE*

Ga0103359_122419

Ga0103359_1224194

F026592

ASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE*

Ga0103359_143999

Ga0103359_1439992

F088920

HHFIFLFLAFFSFVSANLHHYPAFWAGLILHLILHFSQKVAIFALKRVILLLFVPTLFFAGLSVFSPQTSSKISGQTSLHQPWLSPYCLFKD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007210: Human stool microbial communities from NIH, USA - visit 1, subject 764062976

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences