Sample 3300006945

3300006945: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC16 2012 metaG

Overview

Basic Information
IMG/M Taxon OID	3300006945 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0115603 \| Ga0073933
Sample Name	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC16 2012 metaG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	338563328
Sequencing Scaffolds	34
Novel Protein Genes	38
Associated Families	32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Bacteria	19
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → unclassified Archaeoglobales → Archaeoglobales archaeon	5
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Canada: British Columbia
Coordinates	Lat. (^o)	49.9543	Long. (^o)	-116.5155	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001341	Metagenome / Metatranscriptome	719	Y
F001564	Metagenome / Metatranscriptome	670	Y
F002294	Metagenome / Metatranscriptome	574	Y
F002493	Metagenome / Metatranscriptome	554	Y
F002916	Metagenome / Metatranscriptome	521	Y
F003217	Metagenome / Metatranscriptome	500	Y
F004454	Metagenome / Metatranscriptome	437	Y
F004874	Metagenome / Metatranscriptome	420	Y
F007214	Metagenome / Metatranscriptome	355	Y
F007999	Metagenome	341	Y
F011072	Metagenome / Metatranscriptome	295	Y
F013170	Metagenome	273	Y
F016227	Metagenome / Metatranscriptome	249	Y
F018387	Metagenome / Metatranscriptome	235	Y
F020112	Metagenome	226	Y
F024517	Metagenome / Metatranscriptome	205	Y
F029929	Metagenome	187	Y
F031015	Metagenome / Metatranscriptome	183	Y
F035241	Metagenome	172	Y
F038735	Metagenome / Metatranscriptome	165	Y
F039196	Metagenome / Metatranscriptome	164	Y
F046219	Metagenome	151	Y
F050940	Metagenome	144	Y
F056992	Metagenome / Metatranscriptome	137	Y
F059099	Metagenome / Metatranscriptome	134	Y
F062987	Metagenome	130	Y
F063724	Metagenome / Metatranscriptome	129	N
F091496	Metagenome / Metatranscriptome	107	Y
F093913	Metagenome / Metatranscriptome	106	Y
F098955	Metagenome / Metatranscriptome	103	Y
F099502	Metagenome / Metatranscriptome	103	Y
F103293	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0073933_1000002	All Organisms → cellular organisms → Archaea	804628	Open in IMG/M
Ga0073933_1000016	All Organisms → cellular organisms → Bacteria	396028	Open in IMG/M
Ga0073933_1000017	All Organisms → cellular organisms → Bacteria	391608	Open in IMG/M
Ga0073933_1000113	All Organisms → cellular organisms → Bacteria	150325	Open in IMG/M
Ga0073933_1000118	All Organisms → cellular organisms → Bacteria	145637	Open in IMG/M
Ga0073933_1000218	All Organisms → cellular organisms → Bacteria → Proteobacteria	106960	Open in IMG/M
Ga0073933_1000332	All Organisms → cellular organisms → Bacteria	80291	Open in IMG/M
Ga0073933_1000788	All Organisms → cellular organisms → Bacteria	40049	Open in IMG/M
Ga0073933_1002446	All Organisms → cellular organisms → Archaea	15350	Open in IMG/M
Ga0073933_1002718	All Organisms → cellular organisms → Bacteria	14016	Open in IMG/M
Ga0073933_1003059	All Organisms → cellular organisms → Bacteria	12544	Open in IMG/M
Ga0073933_1003189	All Organisms → cellular organisms → Bacteria	12085	Open in IMG/M
Ga0073933_1003308	All Organisms → cellular organisms → Archaea	11675	Open in IMG/M
Ga0073933_1006822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6069	Open in IMG/M
Ga0073933_1009575	All Organisms → cellular organisms → Bacteria	4504	Open in IMG/M
Ga0073933_1010026	All Organisms → cellular organisms → Bacteria	4325	Open in IMG/M
Ga0073933_1012479	All Organisms → cellular organisms → Bacteria	3558	Open in IMG/M
Ga0073933_1013150	All Organisms → cellular organisms → Bacteria	3404	Open in IMG/M
Ga0073933_1016606	All Organisms → cellular organisms → Bacteria	2738	Open in IMG/M
Ga0073933_1026148	All Organisms → cellular organisms → Bacteria	1821	Open in IMG/M
Ga0073933_1030623	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
Ga0073933_1031638	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1543	Open in IMG/M
Ga0073933_1031681	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → unclassified Archaeoglobales → Archaeoglobales archaeon	1541	Open in IMG/M
Ga0073933_1037435	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → unclassified Archaeoglobales → Archaeoglobales archaeon	1336	Open in IMG/M
Ga0073933_1043926	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
Ga0073933_1047244	All Organisms → cellular organisms → Bacteria	1110	Open in IMG/M
Ga0073933_1066948	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	841	Open in IMG/M
Ga0073933_1067681	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	834	Open in IMG/M
Ga0073933_1075717	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → unclassified Archaeoglobales → Archaeoglobales archaeon	764	Open in IMG/M
Ga0073933_1076089	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
Ga0073933_1086711	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → unclassified Archaeoglobales → Archaeoglobales archaeon	689	Open in IMG/M
Ga0073933_1094025	All Organisms → cellular organisms → Bacteria → Terrabacteria group	647	Open in IMG/M
Ga0073933_1094833	All Organisms → cellular organisms → Archaea → Euryarchaeota → Archaeoglobi → Archaeoglobales → unclassified Archaeoglobales → Archaeoglobales archaeon	643	Open in IMG/M
Ga0073933_1117200	Not Available	547	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0073933_1000002	Ga0073933_1000002351	F004454	MDRSRRTVVEVRADLHQRIKQLALLNDLRIYELANAVIEEALADKEKVKALIKRLKLDTWRQHT*
Ga0073933_1000016	Ga0073933_1000016133	F056992	MELRSPEELRQFVDLDRAEVVDERAKGGEVILIPLVNPFAPIPALSAVADNLSWFMEQVTGRGYQKAEEVYDVGFIVREPGHQAFGLKVNAESGMVVISRVSILEDETVFRRYVNYLRTGVFL*
Ga0073933_1000017	Ga0073933_1000017106	F011072	MYYQLQWKTLPGLRGLSCSEFRAEPTAQPDPERGVAIELASEAERDALVRALEQQFAAQRFSNTAAAFEAVKSCVLDWVARRGAEGQQHRNS*
Ga0073933_1000017	Ga0073933_1000017205	F062987	MKNPHAVALGKLGGIARVFRTTPEQRRRWARRGGLARARRYSREQLSQWAKLGGRPRKKEGGA*
Ga0073933_1000017	Ga0073933_10000177	F024517	MYGLHTIQDVHRLVKAFAGVPDCFVPLKTRREISYPLSFRVPLSQVEEIDAAAAREKRKRRSDLLEAIWEVAWAEYKRAGSLEAYASGRRGRGYTRRVSEELQDQIFTAVELILERAPSAVIEELARKLTQWAGKYGSRR*
Ga0073933_1000017	Ga0073933_100001792	F002916	MQYLPGWTVQCVNPDCAARGHWLRADEAFPEFCSNCGAPLRNVPPPLAPRLRLRPRPLVGYRPPGRPRR*
Ga0073933_1000113	Ga0073933_100011370	F002294	VRPFEETVSAELAWLLRAGVPPRALRLTVRELVVTRLERGALGGREVSDAVAAAVRAACRLVRELDAPGDVVETVCRAALEAVRGHGGESARWMPEATSAVYAVLDELAREGAAEPAWRLVARRLERW*
Ga0073933_1000118	Ga0073933_10001185	F016227	LNGVSLKGVCTTLVTTLLVISVAAGDEAPIVGTVKAVDGAARTLTLETSAKGKTREVVVHLAPGARIVKFVRPSEPGKTGFVEQPLALAELTVGSIVSIEARHEGHREVADLVKVVLER*
Ga0073933_1000218	Ga0073933_100021895	F002493	MAEITQQTTSAETQSQDLAARVRAIRARLPGQMLSERVEMARLHYGPLYTLAQLQERIGRTLPFRFGFIRTATLEPIESYRPRIPDEALLKWDDAVQKGIFDKFWVAVPAYFRERQSDPWIVGEISGAGLFAVIARWDE*
Ga0073933_1000332	Ga0073933_10003324	F001341	MTTTPEGRDPTVRTREIVFEADVQAVTPFLKLATVSRDGTGHMTFVSDEGPNLGGLGSAPTPLMYFSAALAF*
Ga0073933_1000788	Ga0073933_100078846	F007214	MHGLSLARLPLSARVFCTLALVGLGLGNLAAVTQAATTVGLAPAAVQASLAPEMPMTHLGHGPTSAEQEIDLAQLGQQARVWIRTPLLIQTSHTHLFGQTLIAGLLGVIFLLAAVPERLKALIVALPFVGTILDIGGMWLTRFVSPALAWVVIAGGGLFALGYLLIAAISLHQLWLRRERVA*
Ga0073933_1002446	Ga0073933_10024464	F029929	VPIFQQSVDSELYEWLLKEQKRRKARSIQDVIRQVLREAMAEAERHYG*
Ga0073933_1002718	Ga0073933_100271810	F035241	MARVLQGPEQAQRAYRELLGLEGSSRERAVDFMAQMARGYGLDLTPWFEAILRFHPAPTARAAAAAYLAAEGREDTVLEVLESLRPPLLTMTLLTGLLDALAPRPATPERVARLTAFAQRFNDDEHYTTLYLGDFTGRDVKRLVRRAVAESLLRQHAPEAVSWPRE*
Ga0073933_1003059	Ga0073933_10030599	F003217	MSEGGFVVQKVEWFQFRTESGEPFLVMVASLPNGFFTAVPCRVPITHAAHGNMALGSSVDDALRQLQNTLAGKTVEEIFRSE*
Ga0073933_1003189	Ga0073933_10031895	F039196	MSREQTFLLALGLLIAAAALVSAGGFVLLARDRRAGRAAHHPEAAEER*
Ga0073933_1003308	Ga0073933_10033082	F013170	MSVHLHTTITRKTNEALEELAKTYGTKSRVLEKAVETLLRVDKVGSCDDCVIKARMSEQTNLREALDLTSIGRKTLDSLLDVAVGDKTIESLLKEQKAEAKNIIEILKGSVAWKTPSNFKEFISVLEEIKNLTRMFDIPSYSEIDSVAILRPKAFKRLPEIVAFQIATILEGIGVPFDLRMMGEDIVVKMIRSEVYPLRRKEFSEFLDQQIEKRLSNVTPGLFKNNLMLVGPAFMSWAEKHLEEPVTDLGSFIEDVRIALGADELPKEPKDFVKGLLSACVKMNWFRQAKVLAEKEENTLELVFQVTAIPVTRISVAAFSVMLATRGWKLVNYSIEHTTVNMTVKYVGAEDQSLLDQLAELSLFQTIGKQFLDVVPVPRELFNSFASKVYETDRQKFDEIYRATGVRIANAIRMLARNDPEKIRRLSQNFILKSINATQPDAEVRFVDDEHFTMIFKRVEPLIMNSQRMLIESMFRELGYDISTTVFQNLLSFKLKLLEKPVLEPVPRKRIMQTLVDEMTSCKTVEEAFALEKEQLDEMFPEDYPWTIREVGDRLIDMYRELGIEVEIEYFEGGFTLKYKTCPYYKLVKNQQKTWLCTVRKKTLDYVISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTGFLEREEKTH*
Ga0073933_1006822	Ga0073933_10068228	F018387	VLGAEPPLLEQGSVQFILFGLTVLAIFVGLWITISK*
Ga0073933_1009575	Ga0073933_10095753	F063724	MSSGWLQRWRDAYYTENPIVWLLAKTESELCLRQISAPETAETGSAPSRLQLLKSDPVYSTRYFLWADEKEFERTLLAPWHLPSNRWMPVSDQIYLAFASLVTMTALVIHYALAKSPVWVGAIGVGAVVLAFFLPMARPMLALHSLAQTLTADTPLHIGVSRLTPAHLVYGALLYGVGRIARASAVYGILPALLVATIAQGTVFRGLPTAILLWGYSVCVGALWILCTLATVYGQATRLYGASRDWVRWQNILALAAGLLSASLLAVSVPAPLPAPALTAWVHTTLWWWGFLPPLGIVSGLAVGFHPLWTLSHIVGTLLYIGLGATACTRLLRGVWRSQEQPLNAETEGWE*
Ga0073933_1010026	Ga0073933_10100265	F059099	MAQNPEDPVVLDPQEVLRLIDEARSRLRTAIWALHGMHQDMNALTADDLADVEHMLTELLDGALTPAYESLSQIVQTNPDGTVTTH*
Ga0073933_1012479	Ga0073933_10124795	F093913	MRAYVKTAGTNIVFVDIDTGERVSVSATAIQKLFGVAVQEGDVWDFRASKLDDIAENFRKWQIVQQA*
Ga0073933_1013150	Ga0073933_10131503	F004874	MGFNAMRPGKVKRGDLLYLAAALIVMAALVIWAVR*
Ga0073933_1016606	Ga0073933_10166063	F031015	ANTWGRIEIPASGDGYYDQYRIEVQRTGGSDYALTSKIIGVR*
Ga0073933_1026148	Ga0073933_10261482	F099502	MTEKANQESALGTIIGWGSLGIFALWFAYQVGAPLLIGEQWAEKQNDAIELVKNSKPLGNETLYDMIRAYSLKAKENDFFVGEFSWSAIQKDGPEYEVTLLWTEGDQKKVALWRVNLENKEVRPQGDAASLPQRLAAGPPKKGTGS*
Ga0073933_1030623	Ga0073933_10306233	F001564	VRRDELCDPGLCPDAPEGGRCDHCPLGRLDAAQSSEPGQLLRRALNLRAALKLGVKLSLDEIAADEFQAMLIIEEEQVRWEEECTKRHG*
Ga0073933_1031397	Ga0073933_10313972	F046219	LDAAQSSEAGLLLRRALDLRAALRLGIRASLDEIRADEFRALIVLEEERDALDREQMNAHGR*
Ga0073933_1031638	Ga0073933_10316383	F020112	MVSKAFRKCVDLIEEMLREGYRLQIPSTHVERLIKIHVGADKRTIQKYMKMLTEDLGFLENTAKNSLGIIIYRINIQTIEQHVSEHLKEKLRQLTLLDMRLKQEEEVKTEKI*
Ga0073933_1031681	Ga0073933_10316812	F103293	VALNLEAVPWLEPPYEIFEFRPCEWAAFHVTAFKIGKMNIAPRWPGAPTAKLILAIRLFVDPKTKPAYPHYYDITPSRLVNQLSAVLTAGIPPGMYLRIHRDVAGPKAHFSVEWAPTV*
Ga0073933_1037435	Ga0073933_10374352	F103293	MALDLEAVPWLEPPYEIFEFHPCEWAAFHVTTFKIGKMQIAPRWPGAPTAKLILAIRLFVKPETKPAYPHYYDITPSRLVNQLAALLTRGIPAGMYLRIHRDVAGPKAHFAVEWAPIV*
Ga0073933_1043926	Ga0073933_10439262	F091496	VAREIDWQLFEKACDLTASALRGSMGGEGSQPPRFAAEVFREVWAALKEASADLPAKPKAGF*
Ga0073933_1047244	Ga0073933_10472442	F098955	MDSSAIPVFLAGPFPVLHSAWVQEPDGEVELDVALLIGGVPTMIAATRFPLDETWDRIRRALESGDARLGVAGVPHEEESPIGTREVYPAAYVGLECANGERLVLAHIRAPRPGMEPEAFARHVLSSILKGHTPLELGEPIEE*
Ga0073933_1066948	Ga0073933_10669481	F103293	MALNLEAVPWLEPPFEIYEFKPCEWAAFHVTAYKIGKMQIAPRWPGAPSAKAILAIRLFVDPKTKPAYPHYWDITPSRLVSQLAAML
Ga0073933_1067681	Ga0073933_10676813	F001564	LIHWALRREELCDPGLCPDAPDDGGRCDHCPLDKLDAAQSSEAGLLLRRALDLRAALKLGIRIGLDEVPADEFRALVALEEERDALDREQMNAHGR*
Ga0073933_1075717	Ga0073933_10757172	F103293	VALDFEAVPWLEPPYEIFEFRPCEWAAFHVTAYKIGKMNIAPRWPGAPSTKTVLAIRLFVKPETKPAYPYYWDITPSRLVAQLSAMLTRGIPPNMYLRIHRDVAGPKAHFTVEWAPTV*
Ga0073933_1076089	Ga0073933_10760893	F038735	MEEESKAMRWFIDSMLGYWILLLAISMGTAAAVYLLWLKQAAFSG*
Ga0073933_1086711	Ga0073933_10867111	F103293	VVSVALNLEAVPWLEPPYEIFEFRPCEWAAFHVTAFKIGKMQIAPRWPGAPAAKLVLAIRLFVDPKTKPAYPYYYDITPSRLVNQLAAMLTRGIPPNMYLRIHRDVAGPKAHFAVEWAPTV*
Ga0073933_1094025	Ga0073933_10940252	F050940	MGVMPGNRYWKRFDHGLCNNGYQYYVGLNCLRPDETFAADERVLCSYPGFHFGSRSWCAANYPERPLEALIRIPEDAQINEPWATDGKASADRIEILQVFDVVTGEDVTDQYRKGTA*
Ga0073933_1094833	Ga0073933_10948331	F103293	VALDFEAVPWLEPPYEIFEFHPCEWAAFHVTAYKIGKMNIAPRWPGAPSTKTVLAIRLFVKPETKPAYPYYWDITPSRLVAQLSAMLTAGIPPGMYLRIHRDVAGPKAHFSIEWAPIV*
Ga0073933_1117200	Ga0073933_11172001	F007999	VSDAWTTRRLARAAQARANLVAALRECCELADAVETFEGEELLEVLVHLDGLRFVMAESGQILQGVIRGIEELER*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300006945: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Dewar Creek DC16 2012 metaG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences