NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004341

3300004341: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC1B



Overview

Basic Information
IMG/M Taxon OID3300004341 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110188 | Gp0091619 | Ga0066228
Sample NameSediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC1B
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size40253155
Sequencing Scaffolds13
Novel Protein Genes13
Associated Families11

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales1
Not Available8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)mangrove biome → intertidal zone → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationSao Paulo State, Brazil
CoordinatesLat. (o)-23.8553Long. (o)-46.1394Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000734Metagenome / Metatranscriptome915Y
F001346Metagenome / Metatranscriptome718Y
F001418Metagenome / Metatranscriptome698Y
F001633Metagenome / Metatranscriptome660Y
F008255Metagenome / Metatranscriptome336Y
F025292Metagenome / Metatranscriptome202Y
F025922Metagenome / Metatranscriptome199Y
F028190Metagenome / Metatranscriptome192Y
F035541Metagenome / Metatranscriptome172Y
F043157Metagenome / Metatranscriptome157Y
F067247Metagenome / Metatranscriptome126Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0066228_1000122All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae2063Open in IMG/M
Ga0066228_1003907All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales690Open in IMG/M
Ga0066228_1004756Not Available644Open in IMG/M
Ga0066228_1004972Not Available635Open in IMG/M
Ga0066228_1005269Not Available622Open in IMG/M
Ga0066228_1005377Not Available618Open in IMG/M
Ga0066228_1005614Not Available610Open in IMG/M
Ga0066228_1005740Not Available605Open in IMG/M
Ga0066228_1008716Not Available527Open in IMG/M
Ga0066228_1009330All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium515Open in IMG/M
Ga0066228_1009461All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei512Open in IMG/M
Ga0066228_1009580Not Available510Open in IMG/M
Ga0066228_1009714All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0066228_1000122Ga0066228_10001221F028190MPTMASITVKKYDGTTDIVYDALAASGGDGSPAVWRQDTGAASGLPVGLRSTFKVWSTWNGPKTARQVKANFVMPYAVQDSTTTLYSAKDRVVADIIFTMPQAIPAANLNEAYQICNLIAATLFKQMVAAGYSAT*
Ga0066228_1003907Ga0066228_10039071F025292MAVTLTSPVTGAAQTGFTSPTYTHVVDVAPTPEGKQYAVTALGGTQTGVTIHSVASPFTVTVVKPKNFKFLGKPNPVTGVIAGVGRNVWTVIVRKGVLPLAGQPYQTLIARCSIEVPAGSDTADAANVRAALSMMIGALSQVSAGLGDSTVSGIL*
Ga0066228_1004756Ga0066228_10047562F001418FEAKLKGWAAEAEFTSSSGEVRASSVNAKKGLSGEKRLETVSSRVK*
Ga0066228_1004972Ga0066228_10049721F067247VRKLLSIGIVLALLVTFIVPVVVAAQDDECCEWNPPPSVPLPDRTTKTLAGATMWTLLGVTDIMGKAVCATTGQMAANLGGWSDELGVIGVDVTVAALQGVSGLLEYVMGEFLGMADLGTSLADLINGIADALAGATA*
Ga0066228_1005269Ga0066228_10052691F035541QWDVWVWYNEDFLRGCRVHNRLFGALFDNFEFGMYWGISRRAGPLEFALKYKVLDEYEGRFPVSLAFGAEGITGNYQRTDRDPTLYGVLGIHDVHLGGWWDWYVGVSHNPTGYDDEDNSLFGGFKYWVNDDWQVNGDFWGYNDTGEYILAGGVNYDWANHVGFQGWVERDSVTEDNVFVLEVSFQADMTDLTAEVSDPE*
Ga0066228_1005377Ga0066228_10053771F000734LHRGGHEVLAGPVKTFRNVGDVKNGSADLWTKGDLRVKRRDPWPRANALSRAAADLELAGEDAEVKT*
Ga0066228_1005614Ga0066228_10056141F025922MARNRIIYGSQSVWCNGEILYRVQTLGSTTTFTSEDIFELGHLDIIDVVDDVPAVAVTLNSNDWGDVRTMAILAQVKPAKLAMNATATNDNANLAVVSGVNLSEVSYLHGACLADFGITCGNLTGVSLWAPVQSECDLGTLANNIDQTLYMDEVYINSLEFGYTTG
Ga0066228_1005740Ga0066228_10057401F008255QIDIQELFMIVQMQEFVADSTAAIGNQVRKIRKDSVETVRGAAVDSAENLKSLKSPVRTLARSGIKLTAVSHSTVASLIELQSEMLTSAISDAALRLERASRADSVIDLVREQIEMIPATRTRIVEDAQRTASIFKHAGRDLRGVVTHLYERVVEPTEEKATTAAKTAKRKTKRAVRKTTTRARKTAA*
Ga0066228_1008716Ga0066228_10087161F008255MIAQMQDFVAEQTSVLQDQVQKIRKESVESVREAAVGSAETLKSFKSPVRTLARSGVKITSVSQTAVASLIELQSDMVTSALSDAALRLERASRADGIIDLVRDQFEMIPATRARIVEDAQRAAQIFKHAGKDLRGVASNLYERVVETAEEKVPEVQVKVKVAKRKTAKRAKRKT
Ga0066228_1009330Ga0066228_10093301F008255MISQMQEFVADQTSALASQVSKMRKESVESVREAVVGSAENLKALKSPVRTLARSGVKVTNVSQTAVAGLIELQSDMLTAALSDAALRLERASRAEGLVDLVREQFEMLPATRARIVEDAQRAASIFKHAGRDLRGVATHIYERVIEPTEEKAPVAAKSVKR
Ga0066228_1009461Ga0066228_10094612F001633ALAFAGGVLPDATLRGMRMFRSHGGTVLTVTGRDLSSEASAPGSVAPCRERHARRGADTPAIFTVSRRHRYHGDGTGFWPAVGPALRV*
Ga0066228_1009580Ga0066228_10095802F001346VKTFREVGDVKNDTADLWTKSNLRVKRRDPWHRANALSEAAADPELNGEDADPNTQTCLDLVRKPVAQPLVEAS*
Ga0066228_1009714Ga0066228_10097141F043157MSILDELFRNCICLNIYDRIESMRMLEGLLMIKRAKSLERRIR*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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