NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004324

3300004324: Sediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC1C



Overview

Basic Information
IMG/M Taxon OID3300004324 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0110188 | Gp0091620 | Ga0066229
Sample NameSediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC1C
Sequencing StatusPermanent Draft
Sequencing Center
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size25269975
Sequencing Scaffolds12
Novel Protein Genes14
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2
Not Available7

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Alternative Ecosystem Assignments
Environment Ontology (ENVO)mangrove biome → intertidal zone → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Sediment (saline)

Location Information
LocationSao Paulo State, Brazil
CoordinatesLat. (o)-23.8553Long. (o)-46.1394Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001346Metagenome / Metatranscriptome718Y
F006508Metagenome / Metatranscriptome371Y
F008255Metagenome / Metatranscriptome336Y
F009934Metagenome / Metatranscriptome311Y
F023129Metagenome / Metatranscriptome211Y
F034947Metagenome / Metatranscriptome173Y
F035541Metagenome / Metatranscriptome172Y
F043157Metagenome / Metatranscriptome157Y
F067247Metagenome / Metatranscriptome126Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0066229_100145All Organisms → cellular organisms → Bacteria1819Open in IMG/M
Ga0066229_100707All Organisms → cellular organisms → Bacteria → Proteobacteria1087Open in IMG/M
Ga0066229_102258All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi749Open in IMG/M
Ga0066229_102407Not Available734Open in IMG/M
Ga0066229_102424All Organisms → cellular organisms → Bacteria → Proteobacteria733Open in IMG/M
Ga0066229_102536Not Available721Open in IMG/M
Ga0066229_103279Not Available655Open in IMG/M
Ga0066229_103381Not Available648Open in IMG/M
Ga0066229_103416All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi646Open in IMG/M
Ga0066229_103713Not Available627Open in IMG/M
Ga0066229_103792Not Available623Open in IMG/M
Ga0066229_104650Not Available581Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0066229_100145Ga0066229_1001453F043157MGILDERFRGCICLKICDRIESMQMLGELITMKRAKSLERRIR*
Ga0066229_100707Ga0066229_1007071F043157LMGILDEHFRDCICLRMGDRIDSMQMLGEIVMIRRAKSLERRIR*
Ga0066229_102258Ga0066229_1022581F043157VVGDRLISILDERFRNCICLSIYDRIESMRMPGELIVIKRAKSLERRIR*
Ga0066229_102407Ga0066229_1024072F009934VLDGPAMRPATPLAEENSVGKLAACKAPNASMGKRAWRTP
Ga0066229_102424Ga0066229_1024242F043157MVGDRLMSIFDEHFRNCICLNIYERIYGMQMLGESIMIKMAKGLERRIS*
Ga0066229_102424Ga0066229_1024243F067247LRKLLSIGIVLALLVTFVVPVVVAAQDECEDPCQWTPPTCAPMPDRTTKTLAGAIVWSMLGTADVMGKAVCTTTGLMACNLGGWSDELGVIGVGVTAAALSGVGDLLKAVVGAFLPDYGELGDALASFLSQIAEALQGTT*
Ga0066229_102536Ga0066229_1025361F035541VKRLALIFTLAILASLYSVPAVKAYADTTDLNIIPITDTLEEGTFEWDVWARYNEDYPRGRRVHTRLFGSLFDNFEFGLSWGISRKAGPMELALKYKVLDEYEGRFPVSLAVGAEGITGNYDRTGMDPTFYGVVGLHDVQLGGWWDWYVGFASNPTGFDTDDNALFGGFKYWINDDVQVNVDYWGYNENEEYILAGGVNYDWVNHMGFQGC
Ga0066229_103279Ga0066229_1032791F006508VALANAPSKAVADQSQVVKTRKESCRRVLTWFASRWRNHQPKRAE
Ga0066229_103279Ga0066229_1032792F034947VKRSYPEGIRLLLCISTERATLADLINRLNPPKENRRKADKGSARTGKDTQARQVA*
Ga0066229_103381Ga0066229_1033811F008255MIVQMQEFVADSTAALGNQVRKMRKDSVETVRGAAVDSAENLKSLKSPVRTLARSGIKLTAVSHSTVASLIELQSEMLTSAISDTALRLERAARADSVIDLVRDQIEMIPATRTRIVEDAQRTASIFKHAGRDLRGVVTHLYEKVVEPTEAKAAPAKTAKRKTKTKRAVRKTTRARKTATPCAAHLQRCGCGVKMRSARCRSSSM
Ga0066229_103416Ga0066229_1034162F043157MGILDEHFRDCICLNIYDRIDSMQMLGESIMIKWAESLERRIR*
Ga0066229_103713Ga0066229_1037131F023129MVKTLPLACECKGNLRVKRRDPWPRANALSKAAADPELSGQDAQQPSQTCLDLVRKSVAQPPAQAS*
Ga0066229_103792Ga0066229_1037921F001346LNREGHVATAGPVKTFREVGGIKNDTAELWTKSNLRVKRRDPWHRANALPKAAADPALSGEDAEIKTQTCLGLVRKPA
Ga0066229_104650Ga0066229_1046501F001346VVSAGPVKTFRNASDVKNGTAGLGTKGNLRVKRRDPWHGANAPSKAVADLVLSGGDAKKNSQTCLHLVCKPVAQPPAQAS*
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