Sample 3300004064

Overview

Basic Information
IMG/M Taxon OID	3300004064 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101364 \| Ga0055479
Sample Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D1
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	938308745
Sequencing Scaffolds	67
Novel Protein Genes	69
Associated Families	52

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae → unclassified Chlamydiota → Chlamydiota bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → Methylobacter tundripaludum	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Nitzschia → Nitzschia inconspicua	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6
Not Available	17
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1
All Organisms → cellular organisms → Bacteria	8
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia → Thermoanaerobaculia bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → unclassified Thioalkalivibrio → Thioalkalivibrio sp. AKL11	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → endosymbiont of Riftia pachyptila	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter → Hymenobacter roseosalivarius	1
All Organisms → cellular organisms → Bacteria → FCB group	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Lysinibacillus → Lysinibacillus varians	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Candidatus Magnetoglobus → Candidatus Magnetoglobus multicellularis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Amphritea → Amphritea atlantica	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum magneticum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	37.926434	Long. (^o)	-122.509186	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F002104	Metagenome / Metatranscriptome	593	Y
F004052	Metagenome / Metatranscriptome	455	Y
F004928	Metagenome / Metatranscriptome	418	Y
F005789	Metagenome / Metatranscriptome	390	Y
F007779	Metagenome / Metatranscriptome	345	Y
F008223	Metagenome / Metatranscriptome	337	Y
F008361	Metagenome / Metatranscriptome	334	Y
F010065	Metagenome	309	Y
F011832	Metagenome / Metatranscriptome	286	Y
F016304	Metagenome / Metatranscriptome	248	Y
F016664	Metagenome / Metatranscriptome	245	Y
F016971	Metagenome / Metatranscriptome	243	Y
F018530	Metagenome / Metatranscriptome	234	Y
F019205	Metagenome / Metatranscriptome	231	Y
F021102	Metagenome / Metatranscriptome	220	Y
F029006	Metagenome	189	Y
F029294	Metagenome	189	Y
F033045	Metagenome / Metatranscriptome	178	Y
F033260	Metagenome / Metatranscriptome	178	Y
F036417	Metagenome / Metatranscriptome	170	Y
F041207	Metagenome / Metatranscriptome	160	Y
F045770	Metagenome / Metatranscriptome	152	Y
F049640	Metagenome / Metatranscriptome	146	Y
F052020	Metagenome / Metatranscriptome	143	Y
F052687	Metagenome	142	Y
F054019	Metagenome / Metatranscriptome	140	Y
F055037	Metagenome / Metatranscriptome	139	Y
F055292	Metagenome / Metatranscriptome	139	Y
F057476	Metagenome / Metatranscriptome	136	Y
F058634	Metagenome / Metatranscriptome	134	Y
F058645	Metagenome / Metatranscriptome	134	Y
F063710	Metagenome	129	Y
F068850	Metagenome / Metatranscriptome	124	Y
F069741	Metagenome / Metatranscriptome	123	Y
F070135	Metagenome	123	Y
F070315	Metagenome	123	Y
F071942	Metagenome / Metatranscriptome	121	Y
F072045	Metagenome / Metatranscriptome	121	Y
F074893	Metagenome / Metatranscriptome	119	Y
F074897	Metagenome / Metatranscriptome	119	Y
F077315	Metagenome / Metatranscriptome	117	Y
F077325	Metagenome	117	Y
F078289	Metagenome / Metatranscriptome	116	N
F078730	Metagenome / Metatranscriptome	116	Y
F081350	Metagenome / Metatranscriptome	114	Y
F082716	Metagenome	113	Y
F083637	Metagenome / Metatranscriptome	112	N
F084486	Metagenome / Metatranscriptome	112	Y
F087388	Metagenome	110	Y
F103181	Metagenome	101	Y
F103282	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0055479_10000004	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae → unclassified Chlamydiota → Chlamydiota bacterium	28757	Open in IMG/M
Ga0055479_10002736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	4795	Open in IMG/M
Ga0055479_10005660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → Methylobacter tundripaludum	3656	Open in IMG/M
Ga0055479_10006694	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Nitzschia → Nitzschia inconspicua	3428	Open in IMG/M
Ga0055479_10006920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3381	Open in IMG/M
Ga0055479_10012133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2688	Open in IMG/M
Ga0055479_10013599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2563	Open in IMG/M
Ga0055479_10013938	Not Available	2536	Open in IMG/M
Ga0055479_10016891	Not Available	2334	Open in IMG/M
Ga0055479_10018530	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis	2237	Open in IMG/M
Ga0055479_10025807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1936	Open in IMG/M
Ga0055479_10028292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1858	Open in IMG/M
Ga0055479_10035781	All Organisms → cellular organisms → Bacteria → Proteobacteria	1671	Open in IMG/M
Ga0055479_10047954	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1460	Open in IMG/M
Ga0055479_10054149	Not Available	1381	Open in IMG/M
Ga0055479_10058308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1335	Open in IMG/M
Ga0055479_10059558	Not Available	1322	Open in IMG/M
Ga0055479_10061297	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1303	Open in IMG/M
Ga0055479_10069553	All Organisms → cellular organisms → Bacteria → Proteobacteria	1230	Open in IMG/M
Ga0055479_10072444	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
Ga0055479_10079604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1153	Open in IMG/M
Ga0055479_10082227	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
Ga0055479_10083594	Not Available	1127	Open in IMG/M
Ga0055479_10085460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1115	Open in IMG/M
Ga0055479_10088123	Not Available	1099	Open in IMG/M
Ga0055479_10106296	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
Ga0055479_10115852	Not Available	963	Open in IMG/M
Ga0055479_10120197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	946	Open in IMG/M
Ga0055479_10126757	Not Available	922	Open in IMG/M
Ga0055479_10130882	Not Available	907	Open in IMG/M
Ga0055479_10147459	All Organisms → cellular organisms → Bacteria → Terrabacteria group	856	Open in IMG/M
Ga0055479_10147885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	854	Open in IMG/M
Ga0055479_10152014	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
Ga0055479_10152015	All Organisms → cellular organisms → Bacteria → Acidobacteria → Thermoanaerobaculia → unclassified Thermoanaerobaculia → Thermoanaerobaculia bacterium	843	Open in IMG/M
Ga0055479_10155221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	835	Open in IMG/M
Ga0055479_10158380	Not Available	827	Open in IMG/M
Ga0055479_10169634	All Organisms → cellular organisms → Bacteria → Proteobacteria	800	Open in IMG/M
Ga0055479_10170916	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
Ga0055479_10180851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	775	Open in IMG/M
Ga0055479_10182464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	772	Open in IMG/M
Ga0055479_10186655	Not Available	763	Open in IMG/M
Ga0055479_10193765	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
Ga0055479_10196812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → unclassified Thioalkalivibrio → Thioalkalivibrio sp. AKL11	744	Open in IMG/M
Ga0055479_10220243	Not Available	703	Open in IMG/M
Ga0055479_10223247	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
Ga0055479_10232883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	684	Open in IMG/M
Ga0055479_10247004	Not Available	664	Open in IMG/M
Ga0055479_10262300	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	644	Open in IMG/M
Ga0055479_10277184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	627	Open in IMG/M
Ga0055479_10286199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	617	Open in IMG/M
Ga0055479_10296689	Not Available	606	Open in IMG/M
Ga0055479_10304653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → endosymbiont of Riftia pachyptila	598	Open in IMG/M
Ga0055479_10305636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	597	Open in IMG/M
Ga0055479_10316191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	586	Open in IMG/M
Ga0055479_10343869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	562	Open in IMG/M
Ga0055479_10344734	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter → Hymenobacter roseosalivarius	561	Open in IMG/M
Ga0055479_10349020	All Organisms → cellular organisms → Bacteria → FCB group	557	Open in IMG/M
Ga0055479_10359845	Not Available	549	Open in IMG/M
Ga0055479_10365090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Lysinibacillus → Lysinibacillus varians	545	Open in IMG/M
Ga0055479_10387381	Not Available	528	Open in IMG/M
Ga0055479_10391963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	524	Open in IMG/M
Ga0055479_10394078	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Candidatus Magnetoglobus → Candidatus Magnetoglobus multicellularis	523	Open in IMG/M
Ga0055479_10410197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Amphritea → Amphritea atlantica	512	Open in IMG/M
Ga0055479_10410523	Not Available	511	Open in IMG/M
Ga0055479_10413923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum magneticum	509	Open in IMG/M
Ga0055479_10416037	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
Ga0055479_10417016	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	507	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0055479_10000004	Ga0055479_1000000422	F029294	MTQETGETRDAIIEDDNKRIQDIVDFYKSRTDPYWIVVFAKPLKQQVDGKPTLIKHIKPYFTRPSSQVGAIIGEVDNKSGEIKWEVNMPQRPFDFDALKGLGAQECNEVFTETTSIPNAYLTK*
Ga0055479_10002736	Ga0055479_100027366	F055037	VSNGVVDIPAGPVADRLSVWPLDDGTYGLDATFQGASGYERAAQYEDFLTDLPIKWSLRQELDGGWTLRFSPISAEQVSVALSAFVH*
Ga0055479_10005660	Ga0055479_100056606	F078730	METTNIIEPKRVTDLQEMEVHVSGPGGANRLFIYSGMAEVEIRGGLPHPRW
Ga0055479_10006694	Ga0055479_100066941	F008361	DVEELMNIELSEATKELEKATLAVEQAETSKARLDASVELKKATARLEAINYLS*
Ga0055479_10006920	Ga0055479_100069201	F074893	MISSRLEASADNGALTIRINGPMDLLLTSALREFCHDTGTAYRRYIVDFQDVSIVRDSGLALLLMLKRGLSHTGATLHV
Ga0055479_10012133	Ga0055479_100121331	F074897	AEQLAGEALVSISVLADELRQYVKELNSHHENAEFVDYDVAKRVGSLCWRLLAALPDEPDERQHRLTQLAINYFVLAEDAQDDNHSLAGFEDDLQVVTAVIHELGLGHLLEK*
Ga0055479_10013599	Ga0055479_100135991	F078730	MDYSNIIEPKRLTNMQEMEVHVNGPDGANRLFMYSGMAEVELCGGMPHPRWSLEVVCFDIGRRYDVENEGVIK
Ga0055479_10013938	Ga0055479_100139381	F081350	PACIHALTMHQGDRAPVTTAVSLEGCASSARSKPKVHYEPGDLAVIEDDELLGGGTFGYRVINQLDNGIFGLIVRRVLPDGQERVSLAAVEIVVRPMIRQGKIVRVRQIELLGELWLPGMELTSFRSMGNRVHFAAGTGPNRIERDVDFTRLGNLRH*
Ga0055479_10016891	Ga0055479_100168913	F029294	MQQTGETRDAILEDRQKRIDAIIDANKSRQDPYWIVIFAKPASKYVDGKPALVEHIKPYPIRPPAQVGMIIAEVNNKTGKVEWEVNMPQRPFDFDALQQFGAKSCNEVVTETTSIPWAYETK*
Ga0055479_10018530	Ga0055479_100185303	F082716	MINKNDVKLMPFTFIVAPILLISLTFVVVITYEDMIEEKEFIVSLSCPELREYAENQIIESKLYYGSEVYLSYAEERYHSLC*
Ga0055479_10025807	Ga0055479_100258073	F005789	MEGLMATAVTLDTSPLNVLRSMRGSIVGARIAYPEVLHVEIKDSAGELWRLATQDAEWSPPDPLELVGRSVKDADIDEKTGELRCQLSGDLLLDVKPTAREAEDDPPNWELITPGGIVLEFGPGVRWQIGSADSRASSRA*
Ga0055479_10028292	Ga0055479_100282923	F005789	MEGLMATAVTLDASPLNVLRSMRGSIVDARIGYKDVLHVEIEDSAGELWRLATQDAEWSPSDPAELVGRSVDDADIDEQTGELRCKLSDGSLLNVRPANRETEDDPPNWELITPGGVVLEFGPGVRWQIGNADSRAYSRA*
Ga0055479_10035781	Ga0055479_100357813	F008223	MAVFGKLFRKKDRPPSPVEELGKILDRFTTATIMGIDREDLGRYPAKQYKVMAFHFGAIQYLADQYELDETRTLGVFVAFIDKYFNMPISETGSISERLQGFLENEEERAYLDAGLDVFRRWHEHNERRAPLELGEMLKSK*
Ga0055479_10047954	Ga0055479_100479541	F077325	TIMAIIVNMINQKEMLKDLGVKSELQKSFKIENTKEYVLGLFSGIVINLFANYWVGEHEAGLRPEDLSYLYHKISQSSELITKGLFE*
Ga0055479_10054149	Ga0055479_100541492	F069741	LRGAIIMENIIFDVDQLSRLSKIEQAQRLEEAARRIDAVQRAAADDPNSRDWVDQQRQYLVDMQHLIFEC*
Ga0055479_10058308	Ga0055479_100583082	F019205	MFDSRKSFSSKAADAADLVIDFATLGEYGLEPVEQPTRTCEGRRRIGRPRSTGAWTAAIDRFATQP*
Ga0055479_10059558	Ga0055479_100595581	F084486	MRLARFFETINKHRRALDLAIEQNFDGLLDAAGWRQAFEPPEPEDANRTMVVTGDHSAILNAYIEILKASAGSRLVGLLPHRRPHADQAIEAVRADKGLTNVQATLLNELYVLEGRLEHASPDVSAEEVRVAVEKLRASLPTLVESLRAWLARHGIEFG*
Ga0055479_10061297	Ga0055479_100612971	F036417	RIPLRRCIPTVIVRLATPDGEVAFRARWRSTPLELQRMILFRLRRGRPLWFEDEFGHDLCFRADAIHGAVVDGRTRLAGVK*
Ga0055479_10069203	Ga0055479_100692032	F019205	MASDGDRKFEPMFDTKKRPADRLADAVDLTIDFATLGEYGLEPVDKASVRPCEGRRRIGAPRSTGAWDSAVARFSVPIQ*
Ga0055479_10069553	Ga0055479_100695532	F068850	MLVVSTLWLLPASAQEPLEQDTISIKGNQGLPKTLYIAPWKRVGAPLESDGPEAEIGEENEPVERDIFQRELELQRQGYSVE*
Ga0055479_10072444	Ga0055479_100724441	F103282	MRGESGISFTGLYICGAISFVMLVLKLSVIDAWSWWRVILPVALFAGFHVTNIIVAFIYLSFAHIPERPDGDEADILEPHTINVHYVAAMLLFIVFGDNVVRWIEGIFPVFISFKLFDDLH*
Ga0055479_10079604	Ga0055479_100796042	F083637	MFFVIICSAVLALGLAGCAGKGKVPIGKGKAPAPVVTKG*
Ga0055479_10082227	Ga0055479_100822271	F002104	SSLNKVGMKSKKAVQQALDPQEAQLIEQLREHPEMMARVQSIMEITRNAEGPLKTADEVEELLVEQMRRLGSETMSRWASQAEERVSNELKSQDPTVRSRKKKY*
Ga0055479_10083594	Ga0055479_100835941	F033045	MNTSELKLPEHLFTDDTDPDGAITRLIAPDRLVSWAEEGRGDAINRLCHTVYEKRLARIDAWERDRILQLEKEWMAAGNDENMSGFKYANVKHYHTTREDVAREAELKRAVVKERMKEHQAAIEELVQEARAFISAYVAQQDEGDMLSYLLGIVVLIGAGYALLN*
Ga0055479_10085460	Ga0055479_100854601	F016304	GLLLIADAFTVGALLVVRPQGWLPPLVAFGALLVGLVAFEGWAIRHRHDD*
Ga0055479_10086806	Ga0055479_100868062	F021102	MVWLARYTGRDGKRLVAKPSWNRGKGTFRRKGEAQRAIDEAYGLSDRPDTLGDYFASWTERHPRSERTNATNEHRISRATEVEIEGIALKDWPMRELRRRHALAVVDHMLRVQGRATTGVVGIVRSLSAMAEDAITDEVCDLNPFK
Ga0055479_10088123	Ga0055479_100881232	F045770	MADLTADAYLRIWGEATTQRWVLDNSAAQTIYKGQPMIMDLSEDTVYPRGFVDATVVAATDIFIGIAAEGATVATTDTETDNELNIYVEPTIVGFPGSVFTDADVGDTMYMSDSATLSATDTANPMIGKLVRVEGGFQYVRLSSPTVTTGA*
Ga0055479_10106296	Ga0055479_101062961	F072045	MPQLHVRKPNEAPLPSRSSKAVRELQEKYDDFIRGVDAADVGDLELDPGENVRSVKVRLRRASSRLNTDIDIWDVNGHVYFRKVTRRGRPRKLA*
Ga0055479_10115852	Ga0055479_101158523	F054019	MPTIIVMSKSAAERNTLETLREDVQPVHLESEHHAAQLIERIGWAVADAEADEGTRT*
Ga0055479_10120197	Ga0055479_101201973	F004928	VEIIVHITESLGEQQRGDLIAALEGYGGITAAEFCPLRYHLLLVRYDRDLYSSKDVLERVTSQKVSGRLIGPV*
Ga0055479_10126757	Ga0055479_101267572	F077315	MMICRGSTLFLSRLAYYQLCSLLLLGLLVPAQAAEALKPDALPQAQATLERLEEQLATARTANAQELKTLRKKIATVRSTAQDCLQQAEPRVEILDSELAILQPAKSKDTQKKTADE
Ga0055479_10130882	Ga0055479_101308821	F029294	MKQETGETRDAIIEADNRQIQAILSANKQRTDPYWIVVFAKPAKVSVDGKPTLMKHIKPYGTKPPPQVGQIVGEVNNSTGEIQWDVNMPQRPFDFDALASVGGLSTDEVVVETTSIPGAYITK*
Ga0055479_10147459	Ga0055479_101474592	F016304	GLLLIADAFTVGALLVVRPHGWLPPLVAFGTLLVGLIAFEAWAIRHRHDDG*
Ga0055479_10147885	Ga0055479_101478851	F016971	MDEAVQKVPDESKNAVEIVVHIKEDLGEEQRKLVVSALEKTDGITGAEFCLLRNHLMLVNYDKNVFSSQDALKSFNSLN
Ga0055479_10152014	Ga0055479_101520142	F049640	MPRDLIRLELLPHERAALLKWNFTPEVRDQLDACASSADVVTITLTSTDIRWLAGDLTHAIVKGGCRDADVIDLSERLDYVEQTGDGSLDAWH*
Ga0055479_10152015	Ga0055479_101520152	F058645	VFDSLLHQGLRAGINVARPGGFGATAGFGMSLKEQDPLRTDLDIANAYSFNGGVRHSNLFRGVSAGLNGSGFTNGYTKGGLLTARAGWRATGGHTFDLSWGYSRYRVEQTQEDRAQQWLRLIGRGQLGRRFYVLGDFEYDAGDDLEGPRVFIELGVLF*
Ga0055479_10155221	Ga0055479_101552212	F019205	MFDTKKNFSGHLADAVDLTIEFATLGEYGLEPVDPRPRACEARQRGARRSTGAWTAAIDRFAARS*
Ga0055479_10158380	Ga0055479_101583801	F070135	QHMYSCDLLGSYALNIPLDSNGQYKLQVYADGFAPMIQKFDEFKTLNDVRMTRAVEC*
Ga0055479_10169634	Ga0055479_101696342	F063710	MNKPRQRSLRVRVEHEPNRFSGGCLERIYEQLHPTKSREVTPDKNHEQGEVEPQKGKGNQQ*
Ga0055479_10170916	Ga0055479_101709161	F033260	HVLDEADDPRARRALGLERGARVTVPLTGTKPPSATRLRSLISNLVQLRPVLEDPNRELWLELPGETPGLVLYAAPEPDPERPLLLDETVRLAGDVEARIVVRRAAAPIPLSPSRAMRRGGLLVRSGRAVHETTLGDYEGRPGARHLFGEVVCDGIERLQREALDSARPQVLVKVDRSGLNEHHPVVRKLRAAIDLALRPIVEAEERRAESGAVRPGRELRARDQVGLRALNDALRSAFDAPGSAGFGRGAEASGRAPLHDEDGD
Ga0055479_10180851	Ga0055479_101808512	F057476	MSDEKSPTEPSESSLAELPEQDFSRAVRPNRYANLRGEFQHAVFVDREIWEHFGSEDRILEVLRLLVEIADKRSA*
Ga0055479_10182464	Ga0055479_101824642	F016971	MNQVAQHLPAEEKCAVEVVVYIKKDLGEEQQDLVISALEQTNGIMGAEFCVMRNHLVLAKYDKDVMSSQDVLKSFNSLNLEARLIGPI*
Ga0055479_10186655	Ga0055479_101866552	F087388	MAKTVSELAREIIRRLDQGEPLESAISMVLTGEGVEDDVLVELQVAGLRDAVIHEAFHELLDWHANFGGLAEFLEIDEAIHRTAERIGHDFDQDLPDHPSEPGARLVH*
Ga0055479_10193765	Ga0055479_101937651	F055292	HPATVAPAGSNRSGCGGDEAVKASGVEGHYSDLASIQAITSSER*
Ga0055479_10196812	Ga0055479_101968121	F016664	MDQAINRVQAARESSNVVEIVVHVSENLDDQQRRDLVAALEQEDGIVSAEFCPLRYHLMLVRYDRDRYSSQDVLQAVGTQKIQARLIGPI*
Ga0055479_10220243	Ga0055479_102202432	F071942	MKKPGEFRTPDLYFAAYLQTAGVELLRPDREGGRVYFVFDSTIANVDELKTAWFNNTGKVAAQPYAHNIKSLKSICHMT*
Ga0055479_10223247	Ga0055479_102232472	F019205	MPSDADPNFEPMFETKNTFSDKAADAADLVIDFATLGEYGLVETTPMDPPRSSCEGRRRPGALPRSTGSWNSAIRRFSTQS*
Ga0055479_10232883	Ga0055479_102328831	F016664	MDQVVKEMPVLDEVKDTVEIVVHIAEDLDDGQRHNLVVALEQSEGITSAEFCPLRYHLMLVRYDREHYSSQDVLGAVNDHKLEARLIGPI*
Ga0055479_10247004	Ga0055479_102470041	F070135	YALNIPLDSNGQYKLQVYADGFAPITQKFDEFSTSSDVRMARAVECQ*
Ga0055479_10262300	Ga0055479_102623001	F001506	MNRILYESRCRCNEEFLITKKRSSSNRSEGKPLQYPKPSEITSKTFQIKYEKELSSIAKFVLNSFQNKYIYYAIDDILYLLKSNPIERDHLLAIIYSPVLSLQNNFSINFFDIWINEIYINEVPKVNKFITNDFQNFEQF
Ga0055479_10277184	Ga0055479_102771842	F103181	MVTAPDNDDDLEPRYAGWLDLPSSTREPMTAKDANAARKALIELDDRTPQQRLLGEPPTWRSALAQKGLC*
Ga0055479_10286199	Ga0055479_102861992	F016664	WGEVAMDQVVHQMPTLDVAKNTVEIVVHISESLDDAQRSNLVVALEQIDGVVSAEFCPLRYHLMLLRYDRDRYSSQDILGAVSDQKLQARLIGPI*
Ga0055479_10296689	Ga0055479_102966891	F004052	VQLALATLLCSCDQQHYTSDVDPKLGLECFESHRASFLQGTQYEGIEKLTENRLVIKIMDGVEVMTLDCGLNPDGTLQIIGK*
Ga0055479_10304653	Ga0055479_103046531	F016664	WGEVAMDQVVHQMPTLDVANNTVEIVVHISESLDDVERNNLVAALEQNYGIVSAEFCPLRYHLMLVRYDRDLYSSQDVLHDVSDRKLQARLIGPI*
Ga0055479_10305636	Ga0055479_103056361	F041207	MLKTLPQEELERVNTLSIIEAVAYANRLTHRLKRNDCTAEERKNGLELLQRLTLRVRFLKIALEPTYFRTGSGH*
Ga0055479_10316191	Ga0055479_103161911	F007779	AKTACVLQGDGAMFEALLEKRAIQREEHRAYQERVDDCLAVLFCGFPEGVLPVLRHRVGNAGLVRRAQAEGTDARSCSVQLAVLLIRKLIASLSDQERQDLARAFLQNDATNPTYKGFKSMFWVVERLEVSPALVSYLNTEVAGQLRGMSQQAIFGSWVEGQVSGVMGRLRERCLEEAEFKADLWR*
Ga0055479_10343869	Ga0055479_103438692	F019205	MASERDRRVELMFDSKKSFSHKAADAADLVIDFATLGEYGLEPVEQPSRACEGRSRIGTPRSTGAWSAAIARFATQA*
Ga0055479_10344734	Ga0055479_103447341	F011832	ERAEAEGFGEGGKVARRRIQPKPAVELETVSLRLPARLVRAVEQYAKYLGGSTDRTHVITQAVEIMVAQDADFQKHLEARRVAPAPRPAPVSPANPATK*
Ga0055479_10349020	Ga0055479_103490201	F052687	MIKFLTIVLFLTALGGGTYYLLSMETVEDVKVTGKLQISEQYGSYVMASQSEGANYYAVIEGKVKNNLGKSIKNVFIKYVISGQETSATIFDLAPGQELHFNTSGVATTGSSPEYDFV
Ga0055479_10359845	Ga0055479_103598452	F029006	MNKMIIALMAIYFMGDPGLQYLAWLGELKVYIVAAAIALVSMPWIA
Ga0055479_10365090	Ga0055479_103650901	F010065	TAQVLPSRGRLKRVTMRGESGISLTGLYVCGAIALVMLVLKLSVIDTWSWWRVMLPLGIIVGFNVTNMVVAFIYLSFAHIPERPDGDEAEVLEPHTLDAHYVAAMIFFVVFGDNLVRWIEGSETSHWFWLFSGKIEALAVFGTLSVVALFSYWSRLGRVLKASG*
Ga0055479_10387381	Ga0055479_103873811	F070135	NIPLDNSGQFKLQVYADGFAPTIQIFDEFKTTNNVRMARAAECQ*
Ga0055479_10391963	Ga0055479_103919631	F055037	VTMEGSALPTKAGPVPDRITIWPMDDGRYGLDATFQGASGYERVERHAEGLKRDRVRHSLRQELDGGWTLRFGPLSAAEVGGALGAFVC*
Ga0055479_10394078	Ga0055479_103940781	F078289	TLFIVVPLYGFNSLVRHEDIPKMRELGISQEVIQYFISNQTSSVSSEDVINMKQSGLNNDAILSAIKSDLYRPEHTSTSMKEAELIAKLKESGMSDEAVLQFIQTVKSTRRVDSYGNVTKQYTNESHRTQYPTTGATFPKLDNYGYDPSNGRFLFFITPQNQQ*
Ga0055479_10410197	Ga0055479_104101971	F077315	MMVCRASTLFLSRLAYYQLWTLLLLGLLVPAQAAEALKPDALPQAQATLERLEQQLATARTANAQELKTLRKEVATVRSTAQDCLQQAEPKIEILDSELAILQPDKPKDTQKKTAQETQPAEQPEAPVSPAIAGQLQ
Ga0055479_10410523	Ga0055479_104105231	F018530	TPTMQAFVQVVRDYTRDHSELNRLIAGQESNDRLVAWAVLDALSIFNGTPHLTNLSLEDLLARNQHALMLRLTVITLLESVGLLQTRNHLNYSNGGLNVGVNDKTPLILQWLQYYQASTNQMMARVKAALNIEGILGPSNSGVHSELWAVNSSYLAY*
Ga0055479_10413923	Ga0055479_104139231	F070315	MATDVSGREGLSAGALAKELGVSPAKVKRALAELGVEADFVKSGCAYYYPERSAAVKKVLAKS*
Ga0055479_10416037	Ga0055479_104160371	F052020	ATLRNGILSYGEIRDSQSGKLQVLTFAGLLWTLFQSLIEGVLENLVADLGRRTINKVTRAINDSVENFLNEALQMKPEQITVQLKAEELGYI*
Ga0055479_10417016	Ga0055479_104170161	F058634	AAALAGCSADGSQDAEGVGNVGMEVTLATPPAGPNEQIDSVDVSLYCEGIDPVLGVPRPSQSSPEEFTINTATSQGPEPKNTIGLFEKQGLPAGNCYFSFAAASNTGNTQCTGELTVAVQTNETTEATVVLACIHTPRYGGVRGDGTFNQCAEYRQILVTPTTQAIGNL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004064: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences