| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300003075 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0059069 | Gp0051328 | Ga0051126 |
| Sample Name | Coral viral communities from Mount Irvine Bay, Buccoo, Tobago - healthy corals |
| Sequencing Status | Permanent Draft |
| Sequencing Center | |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 720487 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 7 |
| Associated Families | 7 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 1 |
| All Organisms → Viruses | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Tistrella → Tistrella mobilis | 1 |
| Not Available | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → environmental samples → uncultured gamma proteobacterium HF0070_03O15 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Coral Viral Communities From Mount Irvine Bay, Buccoo, Tobago, From Healthy And Bleached Corals |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Cnidaria → Unclassified → Unclassified → Unclassified → Coral → Coral Viral Communities From Mount Irvine Bay, Buccoo, Tobago, From Healthy And Bleached Corals |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal corpus |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Mount Irvine Bay, Buccoo, Tobago | |||||||
| Coordinates | Lat. (o) | 11.183496 | Long. (o) | -60.816715 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006772 | Metagenome | 365 | Y |
| F008031 | Metagenome / Metatranscriptome | 340 | Y |
| F045994 | Metagenome / Metatranscriptome | 152 | Y |
| F048238 | Metagenome | 148 | Y |
| F051901 | Metagenome | 143 | N |
| F085720 | Metagenome | 111 | Y |
| F100979 | Metagenome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0051126_10131 | All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 670 | Open in IMG/M |
| Ga0051126_10168 | All Organisms → Viruses | 654 | Open in IMG/M |
| Ga0051126_10172 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Tistrella → Tistrella mobilis | 653 | Open in IMG/M |
| Ga0051126_10173 | Not Available | 652 | Open in IMG/M |
| Ga0051126_10434 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 567 | Open in IMG/M |
| Ga0051126_10660 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → environmental samples → uncultured gamma proteobacterium HF0070_03O15 | 506 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0051126_10131 | Ga0051126_101311 | F048238 | MGTKNVHLHYCQIADEHCPLAITRFTSFDLDDKPLAVEQVTYESNMDYMERQVINALRCNVEVSILTSTPIHEFKRLHHIFNCDK* |
| Ga0051126_10168 | Ga0051126_101682 | F085720 | MAHYAFLNNDATTGTLREELSVLYTEMGNLTSIEEPNEEDTAAIEAKQAGIDAKQQEIDNALCVVTGVITGVLETYXXICKR* |
| Ga0051126_10172 | Ga0051126_101721 | F008031 | MASYTAEKGAILQPGNQINRLSSYNTEGVYGWPGFELYEMVGYVKVDNLSADKADNKSFNLTVPSPDRRSSDRVRDDRTSLVVQADADRPAYIYSASIAIGQDIPSAGEPSYPATPLTADIDGTNTEILLFGPDNSGSPYGVPATQANGLAAATAITTAFSSGTIAQGCAACI* |
| Ga0051126_10173 | Ga0051126_101732 | F051901 | MTPPPKVNFTKAAADMARADYLDELFLKDGRDQVSHPLHGTYTGLYQMYTLQKLG* |
| Ga0051126_10434 | Ga0051126_104341 | F006772 | MPQPKSGRQIIMERLNKAIQLATTADLQRAAMFLEGAREVRKGSRRQRTNARSAQATAWKKKVDDSITW* |
| Ga0051126_10625 | Ga0051126_106251 | F045994 | MSKTLLTDEIVKEQLEQDGIMEEPDAPWLLEYINTEYGSKLDNTTDWVDNKNMLKIYSESTADSYDIYWCTHDERPYVCQDGYYYEDYTXXVRSSNTRISIWL* |
| Ga0051126_10660 | Ga0051126_106602 | F100979 | MVKLAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMQEKTN* |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |