Sample 3300001652

3300001652: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040

Overview

Basic Information
IMG/M Taxon OID	3300001652 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0057365 \| Ga0003879
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	10459433
Sequencing Scaffolds	47
Novel Protein Genes	53
Associated Families	52

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6
Not Available	13
All Organisms → cellular organisms → Bacteria → Acidobacteria	11
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Allochromatium → Allochromatium vinosum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.550409	Long. (^o)	-72.180244	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000083	Metagenome / Metatranscriptome	2471	Y
F000236	Metagenome / Metatranscriptome	1499	Y
F000761	Metagenome / Metatranscriptome	902	Y
F001122	Metagenome / Metatranscriptome	770	Y
F001686	Metagenome / Metatranscriptome	652	Y
F005953	Metagenome / Metatranscriptome	385	Y
F006671	Metagenome / Metatranscriptome	367	Y
F006761	Metagenome / Metatranscriptome	365	Y
F007656	Metagenome / Metatranscriptome	347	Y
F008100	Metagenome / Metatranscriptome	339	Y
F009027	Metagenome / Metatranscriptome	324	N
F009905	Metagenome / Metatranscriptome	311	Y
F010504	Metagenome / Metatranscriptome	303	Y
F010674	Metagenome / Metatranscriptome	300	Y
F011170	Metagenome / Metatranscriptome	294	Y
F011263	Metagenome / Metatranscriptome	293	Y
F012806	Metagenome / Metatranscriptome	277	Y
F014411	Metagenome / Metatranscriptome	263	Y
F014678	Metagenome / Metatranscriptome	261	Y
F016178	Metagenome / Metatranscriptome	249	Y
F017208	Metagenome / Metatranscriptome	242	Y
F019719	Metagenome / Metatranscriptome	228	Y
F020247	Metagenome / Metatranscriptome	225	Y
F022487	Metagenome / Metatranscriptome	214	Y
F023803	Metagenome / Metatranscriptome	208	Y
F030235	Metagenome / Metatranscriptome	186	Y
F030583	Metagenome / Metatranscriptome	185	Y
F032874	Metagenome / Metatranscriptome	179	Y
F033160	Metagenome	178	Y
F035649	Metagenome / Metatranscriptome	171	Y
F036891	Metagenome / Metatranscriptome	169	N
F037348	Metagenome / Metatranscriptome	168	Y
F037438	Metagenome / Metatranscriptome	168	Y
F038262	Metagenome / Metatranscriptome	166	Y
F038357	Metagenome / Metatranscriptome	166	Y
F038866	Metagenome / Metatranscriptome	165	Y
F041178	Metagenome / Metatranscriptome	160	N
F045330	Metagenome / Metatranscriptome	153	N
F047833	Metagenome / Metatranscriptome	149	Y
F052767	Metagenome / Metatranscriptome	142	Y
F053432	Metagenome / Metatranscriptome	141	Y
F055292	Metagenome / Metatranscriptome	139	Y
F058546	Metagenome / Metatranscriptome	135	N
F059215	Metagenome / Metatranscriptome	134	Y
F060800	Metagenome	132	Y
F065985	Metagenome / Metatranscriptome	127	N
F069369	Metagenome / Metatranscriptome	124	Y
F073826	Metagenome	120	Y
F077728	Metagenome / Metatranscriptome	117	Y
F080260	Metagenome / Metatranscriptome	115	Y
F082999	Metagenome / Metatranscriptome	113	Y
F083073	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
JGI20274J16320_100002	All Organisms → cellular organisms → Bacteria	4667	Open in IMG/M
JGI20274J16320_100011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3464	Open in IMG/M
JGI20274J16320_100024	All Organisms → cellular organisms → Bacteria	2793	Open in IMG/M
JGI20274J16320_100092	All Organisms → cellular organisms → Bacteria	2000	Open in IMG/M
JGI20274J16320_100187	Not Available	1575	Open in IMG/M
JGI20274J16320_100310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1368	Open in IMG/M
JGI20274J16320_100382	All Organisms → cellular organisms → Bacteria	1260	Open in IMG/M
JGI20274J16320_100658	All Organisms → cellular organisms → Bacteria → Acidobacteria	978	Open in IMG/M
JGI20274J16320_100669	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
JGI20274J16320_100707	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	937	Open in IMG/M
JGI20274J16320_100721	All Organisms → cellular organisms → Bacteria → Acidobacteria	929	Open in IMG/M
JGI20274J16320_100746	All Organisms → cellular organisms → Bacteria → Acidobacteria	908	Open in IMG/M
JGI20274J16320_100747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	906	Open in IMG/M
JGI20274J16320_100792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	881	Open in IMG/M
JGI20274J16320_100837	Not Available	855	Open in IMG/M
JGI20274J16320_100853	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
JGI20274J16320_100890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	831	Open in IMG/M
JGI20274J16320_101024	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
JGI20274J16320_101089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	758	Open in IMG/M
JGI20274J16320_101159	All Organisms → cellular organisms → Bacteria → Acidobacteria	734	Open in IMG/M
JGI20274J16320_101214	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
JGI20274J16320_101297	Not Available	701	Open in IMG/M
JGI20274J16320_101574	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
JGI20274J16320_101578	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
JGI20274J16320_101612	Not Available	645	Open in IMG/M
JGI20274J16320_101672	Not Available	634	Open in IMG/M
JGI20274J16320_101735	Not Available	625	Open in IMG/M
JGI20274J16320_101778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	620	Open in IMG/M
JGI20274J16320_101807	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
JGI20274J16320_101874	All Organisms → cellular organisms → Bacteria → Acidobacteria	607	Open in IMG/M
JGI20274J16320_101904	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
JGI20274J16320_102043	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
JGI20274J16320_102103	Not Available	579	Open in IMG/M
JGI20274J16320_102186	All Organisms → cellular organisms → Bacteria → Acidobacteria	570	Open in IMG/M
JGI20274J16320_102212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Allochromatium → Allochromatium vinosum	567	Open in IMG/M
JGI20274J16320_102320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
JGI20274J16320_102367	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
JGI20274J16320_102423	Not Available	546	Open in IMG/M
JGI20274J16320_102463	Not Available	542	Open in IMG/M
JGI20274J16320_102466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
JGI20274J16320_102568	Not Available	533	Open in IMG/M
JGI20274J16320_102610	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
JGI20274J16320_102642	Not Available	528	Open in IMG/M
JGI20274J16320_102656	Not Available	528	Open in IMG/M
JGI20274J16320_102696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	525	Open in IMG/M
JGI20274J16320_102962	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
JGI20274J16320_103069	Not Available	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI20274J16320_100002	JGI20274J16320_1000021	F037438	DRRRALAFRRREAAEAHAARMRDRCPRNAELINVEEIAAAN*
JGI20274J16320_100011	JGI20274J16320_1000115	F010674	PTFVFSALIWSNILGVVRMVAFSGFRSIAMINLAGV*
JGI20274J16320_100024	JGI20274J16320_1000241	F022487	MPIRGSPNGANHLRPQAGRDRLEQVVAINRNAWSQSIGTAG
JGI20274J16320_100092	JGI20274J16320_1000922	F055292	RWSTAGVNPPGNWFAPPGSNQSSSGGNETAEASGAEGREGDLASMQAVT*
JGI20274J16320_100187	JGI20274J16320_1001871	F023803	RERPESLRVFGRLPVTGVRGCTEAGVRKASREETAGEFAPTLVSIYGEFAAAA*
JGI20274J16320_100310	JGI20274J16320_1003101	F058546	RVMVRNKPKSWSEATIYTRLDAEYWRVQYLSGGTGMFKEGDIRAYDAERDAKRARQPRRAKAAGRRAASRSRYALDPAVIAAGKLPDKAPVVTSAANPHYQKRFDELHKLAAAGDWAAVRDYKVSGSNSYSKLVARYQQDLLALHAASGDAQ*
JGI20274J16320_100382	JGI20274J16320_1003821	F030235	RKVTKREAIITQLVNRSATADLRAIKILLDMLRDIEGQAEPASPETSAFSEADEKVIEQLRARFSKPEK*
JGI20274J16320_100610	JGI20274J16320_1006102	F000236	VQKKIFWLTFTGLGLAADLALPFWWAVFATVPIVYASWWVAYRSDWF*
JGI20274J16320_100658	JGI20274J16320_1006581	F037348	MGHESRIELWSPNLTTFCFAGFGTDRLRREEAMKTAGSENPNRGGTLSRNRAHGAVGQNKSRSIKWAEKQEKVRPKEMCFFLTSPFIELIGS*
JGI20274J16320_100669	JGI20274J16320_1006691	F009027	LEVSPSELIRRIGWIRVVLPDGRHRWVPQKATDLNVSACEARPNRDLPLVSVRTLIPLAEYVRARLSALGERFDETSGHTADPAVRAGIAGSTADLGAEIVADDDADNTTTAGEAGGTATPVNAGRSRRRRFDRGASR*
JGI20274J16320_100707	JGI20274J16320_1007071	F080260	MAGLIAETVAWMQQQRDIYRPVCNALSEAVKVKLRPFFPAETLDNLRLKDLSKTGETIPYPPFYERVRAGGARVVPDAAHMTAIPFIDVALFNRQPTLRTVFHTLVHVTQFSIVGLEKVMEGYFRALNDSGLWMVVPYEEQAYQLDARYTKDPDDVFSVEAEVREWLTS
JGI20274J16320_100721	JGI20274J16320_1007212	F011263	MLTPQRVLRLMIEVIFVLLGVLVVWLALTGRVLVERHKPSWLILSGALILWGLRALYGPNKWWARWENWTRGLSLTLLGVVMLAISRVPFLWVAPLLATAGVLMSLRGIIGAALVFRPR*
JGI20274J16320_100746	JGI20274J16320_1007462	F073826	MGNWYTNVSVKGAQQSDVVAVLEELGRRAYVTPETAGWIVVYDQQTDEFDLGILESLALTLSTRLSCTALASCNADDDVLWLALYENGSLSTRYASSRKSFEDGDEFPELKETAQVLARVLQKPEAKEQVFSLLRKSHGILGLLSLYLKIRLAYVVEVARHLDLSNLLGMPRAAVGLGYTYVNKGETPEGMEREALRRTMVG*
JGI20274J16320_100747	JGI20274J16320_1007472	F041178	EQASHDEGLVKGSHHGXIEXSPVASVSKVQAHLRDAARFRARSTSHAVAAHSSCTKIPLSAGRAQEDENHSRKRHFRPWLATVRLPGSARTDQVLGDDGITLVYSLGNLHRNAFDNDTGGHVFPERDQ*
JGI20274J16320_100792	JGI20274J16320_1007922	F038357	MSPGDPLGNHGQRPIPLAVVFEPVLADEDGMGVSAPLPHQGRAGLQHSAGIERTSASLELARQNPQAALQGAGWTALGALLQLIGEASDDQIATEAQRRSGVMQCPPRTPQLLCRPIDQSGNLAGFKLGQVPVSKSVVPDVDWTETGGRLARVLASRSVVNWRFHRFAGSAMR*
JGI20274J16320_100837	JGI20274J16320_1008371	F014411	PGHGRARNQALRRAVNRLIAVIPAAIVLIVAVSMGIGAALLAYPVWAIPLIAVFGAGGAIVAIRVFG*
JGI20274J16320_100853	JGI20274J16320_1008533	F083073	ATDAAGNLLRDADKVNIGDTVAIQLHRGRLSTEVRKKEP*
JGI20274J16320_100890	JGI20274J16320_1008902	F014678	MIGSFRIGRQGAGSQIGFDHVGDDGTRLGKIESCDSRIHLVE
JGI20274J16320_101024	JGI20274J16320_1010241	F045330	MHVRTVDSRRLDGCHLGARGFFLEAQQSLDFEELAHRLTAFGLRTFNEFGLGGRNSTVAGVGLSVDDFVSAVLVEYMEGKLQHQASRGDLFSLLATALRNDIIDSLRKAAHAREESRSSLPAERDADPAPLSLDELPGSTIDFAGSIDEERYGERARTAFAGEPELAEVVSAVLELNLYKPREIAAEL
JGI20274J16320_101089	JGI20274J16320_1010891	F020247	MTFVGSVHNPKIMLGMLVKVLCGDAIATRRRLPREGNVTFEDLMRGTSDFDVRTVTLEILTSMRYLLPIMVGIVAVIATMRSSSLSWSHDTCRIDGEVGSLS
JGI20274J16320_101159	JGI20274J16320_1011591	F010504	QHDAYDKIAKKQKERDDLIDATRTAFLYTFVSTETRAGRVLYKYSMEPNPAYKATSRTTSIFAKVRGFVWIDPEAGQLARVEGEVTGDITVGLFLAKVYKGSHFMQERYEMLPGLWMPSFSQYDFDGRKLFSTISIHERTFYGQYHRIGPPKEALAMIRAELGKPGGAVADR*
JGI20274J16320_101214	JGI20274J16320_1012141	F005953	MLGLWAGLCLTGTFYATWHGYGGREFAATLTAFAFFFLAMLLFAARGVADGLAARFGPGGGIALGAAAFLAYLIYGLGT
JGI20274J16320_101246	JGI20274J16320_1012461	F000083	MSTLDEITKEKQRVSETLARVDAQREKLTGQLSELEATERVLTRYSKGTHVKKTASAKTPXPPTKAVAPVRSRGRTRPTAAKAVVGERNSPSLSDQVLALASGKTQQEIAAACKGVRPNHVGGAISRHKRAGRIEERDGKLYATQSTGTEQRTVI*
JGI20274J16320_101297	JGI20274J16320_1012971	F065985	MEPPSVQSPFAHSRCCRELGRHELPPERTLLLRLSSYGLMRQSRRLSSPSAIASCEESTQVATSPCCQRNLLDVILRIFPWLPGPLPRRSHRVHXPVDFPDVIGLPPRKDGLASRFIPRTRLFVGEFSRLQTFRYVQAPKFVCLPDRSHRYGNATGRPRLLHPGRTCFVASART
JGI20274J16320_101574	JGI20274J16320_1015742	F016178	MKRNEHERARPNLAGLTSPVQQAELRILLVGRWPALKPLPVFKYETDDYRASIDFDKMRGEWVCHKTSLPSNKVQEFRGGLTEITMALPHDQAEVFAECAAPEQQEQELEKDASRRLQSILEWRENYE
JGI20274J16320_101578	JGI20274J16320_1015781	F001686	MNEFTAWIQSNWYALGNLLAQFGFLAAGVWFARKILKTIRASQEQFGALLKLSFAGAISERPSSIAVADRSFANASPYWLMPEEKPPVGLPEPQESGPNRWAVARHRAMVWLQTPMSNGEAAPWRRAIKWLQAPARS*
JGI20274J16320_101612	JGI20274J16320_1016122	F033160	LLVYLAWRFKNVTSGTWSLALFFAILFCGTIQSIMAAVLLFAGSMDREFLRSEARKFAPWLRAFGLANGALAISMAVWMAEGHTVLAALIAFLGIAIGVTALTLKPVMDRAAIYDSNR*
JGI20274J16320_101672	JGI20274J16320_1016722	F019719	LFVLAAAAIVGNAIFVAVLDPKQFINLAIAIALFVLGLPAYWFWRKRASPAS*
JGI20274J16320_101735	JGI20274J16320_1017351	F059215	RLAVGGSPHLERLHYLKEYLARAKRKPQLVLFEIAGGYDSGPLYQVHQMRFSDRMVAMMDGSSAWWALRWLVSAGDLSLSERFMLGSEILGQLALHVSHIGFLWNSAPVRQATTYDIAGSSPPTRFSDDDAAKLVEQAAAARDLKPDWPPDVPTRWMSAFLAEEIAMLQRHSVKRFAFYSVPSMQGANVAYARRFCAAITKFACIIGE
JGI20274J16320_101778	JGI20274J16320_1017781	F069369	ETIQKLFGSNYPVQGVLSGQLHGHGTRVAPGVTGLFDLAEGRVYGVSFNRLRGQLNLSPDEIRIADAELRVFAPGKENGRGAGIVTGTAGYRFTDQRITADLVGASLPLEDIEKLQSVRLPVGGLVTFRVKANGPLSALESDGTFRVVDFRIGKDVIGSFDGSLSSDGHIAKLELGSAMTTGGISGKVTLGLADPYALNGRVTIAN
JGI20274J16320_101807	JGI20274J16320_1018071	F060800	ILGDNEVADGQWTLKNLADGSQQKLTEQALLNYLKSL*
JGI20274J16320_101811	JGI20274J16320_1018112	F077728	VARNQNSQTGRFLARVLNGNGQAKRPANGASKSTMPSGTIANGAGNPPPEQ*
JGI20274J16320_101874	JGI20274J16320_1018741	F047833	VKLIRRSEQHHTLNSPRPAIPRDHYYFYEKNTGVTHFHVEAGPDGCFPVDQAAGLLAMHCMVRGQTPNDYVV
JGI20274J16320_101904	JGI20274J16320_1019042	F008100	VAEDRLTSSDKRALLLWVLLGIVGVVFAYKYFFQAFPEA
JGI20274J16320_102043	JGI20274J16320_1020431	F009905	MKFRKQIKEAGFLLPNWLGNACPTLLNSTNGVLHGSVGIEVRWTLPAIQVPVRAYYAVNILRLNRFLQLTDGSLFHAHNKLFAFGWALGTLF*
JGI20274J16320_102043	JGI20274J16320_1020432	F009905	AVGFFDLGSGWLLPNWMGNARPTLLNSTNGVLHGSVGIEVRWTLPAIQVPVRAYYAVNILRLNRFLQLTDGSLFHAHNKLFAFGWALGTLF*
JGI20274J16320_102103	JGI20274J16320_1021031	F036891	MNGTGPQMKKLLERARAYLAGLEADRQTALALSEQKAEEAKLIKARQEGFQAALALLGETSAGNDSSGKDRELAADPRGGDDRAAAEEQPRRRGRRPIRELILRELSFSGQPMTAAQIGKAIEYLADRTEIALERMERD
JGI20274J16320_102186	JGI20274J16320_1021862	F017208	FALSERASTEMQTIVDRGGYQYGDKVTVYYDPTSLKALKVKGKPSRPL*
JGI20274J16320_102212	JGI20274J16320_1022121	F038262	LDFDAILPAASIVGSSLIEGLFMTGVVVALASFLAAQVRPPWLRILILLSGALALLGGGWGSPADLAKQFLARLILLAVLAFGVQRLMRLNLLGCFLIVAGTSIFAGAAELLAQPDSFYRANGYALLLVLALFFAWPFAAWRLRAAAASS*
JGI20274J16320_102320	JGI20274J16320_1023201	F006761	GTVKFAPHLTVCGIPDDLAVLDAAADYVRHCGLLPLRVAKSTVTGAVITPFRAVFIEIENSPELREFRERLRDIVSAPPLIPPHISLLYTLDRNSQAPRPDFDVERLKAIAAGCAEAIDDAHFTLGRPVVNSAGGGEQDVRSWNVIRSL*
JGI20274J16320_102367	JGI20274J16320_1023671	F006671	VEPLSPEVLEDLRAGRAPRERKIAVCAGGAHLAPADRAEILAVLAGDVDEMVSERAQQAILSQPTETFVEALKREKAIPALFAYAG
JGI20274J16320_102423	JGI20274J16320_1024232	F007656	MSLYRCRYLDRTFNVFEIQGVACENDAEAIVMARRMSANTGAAGFELLQDERCVHMETMPSATARDHRSR
JGI20274J16320_102463	JGI20274J16320_1024631	F032874	AAFVLLAGLNADAQSPARSSVVIPPIPPGQARIWVYSGSQPTSPFNYPRMEAITFNGAKVGYEQLGQGFYRNVAPGHYVIAAPSFLALDPSQSATVDLAAGQEAYLKLDGLGWPNGGGENTVVEYYVRLMPPQSARTAVAQLAYLSGD*
JGI20274J16320_102466	JGI20274J16320_1024661	F035649	MADAEIVSLRAKLASRPRSDDYRQRRRDFDARSLEYGVASDVTVEPVT
JGI20274J16320_102568	JGI20274J16320_1025681	F082999	FLMLACAVLLSSLLACGCRRNAHTSDSRLQKIDEMLNTQLPPGTPRARVEFFLSSRGYSIEHSSDKSSLVAMVRHVDTDTLQPATARVTFHFDSNEKLLSYDLQSAPDAPLRP*
JGI20274J16320_102610	JGI20274J16320_1026102	F011170	VTVTVAVPVAAVLLAVNVNLLALAVLVGLNDAVTPLGRPVADKLTLLLKPFCGVTVMVLVPLAPRRIVKFFGDAERV*
JGI20274J16320_102642	JGI20274J16320_1026421	F012806	MTDAPPIITNEDAAIDSAFFGSHAGRTCYARAHHXGWVLVVRQIVAQREPPVMLRVWGRLERVPDDDANCLAMWERCAYAR*
JGI20274J16320_102656	JGI20274J16320_1026561	F030583	PMRGEVTNRAVLGRKRHGRPEHPIRVLSGGDDLGGSKLGGLKINE*
JGI20274J16320_102696	JGI20274J16320_1026961	F053432	MDTTASSFTLRKNAKRAAEAMIRKGTAPAVDYDINPSSNGRFEIVWKTVKAAPTTDEVETEIAEASADQPAAASPTEAASQP
JGI20274J16320_102763	JGI20274J16320_1027632	F052767	VKMRESGALQLEYVARVAKLNAILDRAQLEDFRVTNENHALNEVAHELLVKAGWIPR*
JGI20274J16320_102962	JGI20274J16320_1029621	F038866	MTWKDELLMLWIFCTVVIAFAARHFFGGAVYLVEQLAXFSLAYMPGLSRVLIGHLR*
JGI20274J16320_103065	JGI20274J16320_1030651	F000761	MSTLDEITKEKQRIXXALARAEAQREKLTGQLGELEAAERVLARYSKGTPVRKIASAKTPTTATKAAAAPRPRR
JGI20274J16320_103069	JGI20274J16320_1030691	F001122	GTWALDLKASTSFEPLMKQIGASLLERKYAASVKLKATIHQTEHVMTIAARGPGFAFDDTLYLDGRTAPGKLDLLGATSLKTRTAWSKDHQQLIEAHQIKTKQGKEGQLIIKRYLIDEGKXLVAAYTLKLNAEPNQTSARQIWHKEAQATDSRSKKGRVLSFNVKL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300001652: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences