NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001163

3300001163: Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2



Overview

Basic Information
IMG/M Taxon OID3300001163 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0071004 | Gp0054861 | Ga0002899
Sample NameForest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size4197416
Sequencing Scaffolds15
Novel Protein Genes15
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameForest Soil Microbial Communities From Multiple Locations In Canada And Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → land → forest soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationDavy Crockett National Forest, Groveton, Texas, USA
CoordinatesLat. (o)31.11Long. (o)-95.15Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000262Metagenome / Metatranscriptome1428Y
F002592Metagenome / Metatranscriptome545Y
F004457Metagenome / Metatranscriptome437Y
F005599Metagenome / Metatranscriptome395Y
F015807Metagenome / Metatranscriptome252Y
F026463Metagenome / Metatranscriptome197N
F026495Metagenome / Metatranscriptome197Y
F029122Metagenome / Metatranscriptome189N
F030583Metagenome / Metatranscriptome185Y
F031579Metagenome / Metatranscriptome182Y
F039789Metagenome / Metatranscriptome163Y
F044087Metagenome / Metatranscriptome155Y
F045294Metagenome / Metatranscriptome153Y
F076660Metagenome / Metatranscriptome118Y
F084660Metagenome / Metatranscriptome112N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI12705J13279_100014Not Available2526Open in IMG/M
JGI12705J13279_100033All Organisms → cellular organisms → Bacteria1982Open in IMG/M
JGI12705J13279_100105All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis1484Open in IMG/M
JGI12705J13279_100110All Organisms → cellular organisms → Bacteria1473Open in IMG/M
JGI12705J13279_100156All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1329Open in IMG/M
JGI12705J13279_100377Not Available870Open in IMG/M
JGI12705J13279_100431Not Available807Open in IMG/M
JGI12705J13279_100534All Organisms → cellular organisms → Bacteria718Open in IMG/M
JGI12705J13279_100584All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium688Open in IMG/M
JGI12705J13279_100625All Organisms → cellular organisms → Bacteria665Open in IMG/M
JGI12705J13279_100659All Organisms → cellular organisms → Bacteria649Open in IMG/M
JGI12705J13279_100948Not Available543Open in IMG/M
JGI12705J13279_101042All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium518Open in IMG/M
JGI12705J13279_101045All Organisms → cellular organisms → Bacteria517Open in IMG/M
JGI12705J13279_101093Not Available506Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI12705J13279_100014JGI12705J13279_1000141F002592MTEDPEVSVLAARRATQHVRLSSADDAYEHLCILALLPSLAPLHLMLADTPWPRGFGATLTNVGPLSEGFERSVASPLQPRRLCAMGRTV*
JGI12705J13279_100033JGI12705J13279_1000331F026495VFGVAAASRNTRFQAARYGLTWVGLAPTDRASFAWRLPSLDHLVGAGEQRRRNFKAE
JGI12705J13279_100105JGI12705J13279_1001052F031579MIIDRRTANPIARLRPIPDTDRFELFYWSNVKGRWTTFGNLGRMKLMIESAHEIVENDPMFHIPRGR*
JGI12705J13279_100110JGI12705J13279_1001101F015807PHRPKMMERYGEASEARRRKPGHDRLTWSRHRRIFGGQGVRREAGSERLEENHRVVINGSNPDR*
JGI12705J13279_100156JGI12705J13279_1001561F029122MLIRPAIDDTDPIRYRRPTPDGQFSGNIIDEAMRG
JGI12705J13279_100377JGI12705J13279_1003773F030583LAYPMRGEVTNRVVLGRKRHGRPEHPIWMSSGGNDLGGSKLGGLKINE*
JGI12705J13279_100431JGI12705J13279_1004312F084660MKNEDAAWCKMQTYESDLLDTDLLPIRTAVKSPFVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
JGI12705J13279_100534JGI12705J13279_1005341F005599TKAAMGGRAIQRAVTRVKSEQAPKVLMRMPTRHHFGEGRANGKVIDRRTRSIRRGNGHGTLER*
JGI12705J13279_100584JGI12705J13279_1005842F044087MVVEVVPELKEFIFEICGRPEQRVIQTLASNRTDEPFGERMRKGNAGDALDFCHLQNPQIGLPLMELIKRIVVGAEVLRHPELPAKGAVEHSTKCHTIDRAGMDAEANDPSRVLIHDDQDPVGPQRGRLAPEQIHTPETVFHVAEES*
JGI12705J13279_100625JGI12705J13279_1006252F045294MGIDDESSHPELCSEVADGVTRTIVCLFREPDAGNLPVRFNEREQ
JGI12705J13279_100659JGI12705J13279_1006593F039789VNLWTVGCADPRLTAPARSPMDKPGKTPRVSPALPTGRR
JGI12705J13279_100948JGI12705J13279_1009481F026463MAAEQIQDGKANVKVEKQPNGQVRVVIEGLSIAGNMMDVEEGVLQYLNQAGTAIIKEALQQHDVEGDPLFCGLENGRVKGNSPRPTXHISGKRK*
JGI12705J13279_101042JGI12705J13279_1010421F000262IVSCSGQDFGFLQPTPKDLCKCLPIEPDIADYRHLAKHVPIPNIAAQEVSVEIILTWSQDPVIPPDAPRTGREQEVFHIANAYLQNASVNALDCDVSMEISHTADKTAPRMIVETPVDSEYCSARQNLQAQLKQHGFLLDSQHGGELPQALPVDVLGMAFEDFEHDRGHVAT
JGI12705J13279_101045JGI12705J13279_1010451F004457LILCAWTIVGLLFTVREIVVASVHGGHVNWVIVGVIELVYWNVWAACTPLVVALAKRFPLTGQRFVSHIAIHTVTSFMMAPLGSVTAYFLSRGLLGLLFRMTDPGALRLLSTFTVSVLSMSFTGILTYWLVVGLYQSVHFYQAAMERQ
JGI12705J13279_101093JGI12705J13279_1010931F076660MDAQIVHGLKMDAQKTYVLWLNRSTEEQAFNGRGTRARQVAAHLSAEVRAV
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