| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000898 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0075432 | Gp0054553 | Ga0001981 |
| Sample Name | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 58 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 7475555 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 6 |
| Associated Families | 6 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | forest biome → tropical forest → forest soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Luquillo Experimental Forest Soil, Puerto Rico | |||||||
| Coordinates | Lat. (o) | 18.0 | Long. (o) | -65.0 | Alt. (m) | N/A | Depth (m) | .1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005929 | Metagenome / Metatranscriptome | 386 | Y |
| F012657 | Metagenome | 278 | Y |
| F031584 | Metagenome / Metatranscriptome | 182 | Y |
| F057789 | Metagenome | 135 | N |
| F076466 | Metagenome | 118 | Y |
| F091102 | Metagenome | 107 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| JGI12368J12877_100237 | All Organisms → cellular organisms → Bacteria | 1386 | Open in IMG/M |
| JGI12368J12877_100303 | Not Available | 1287 | Open in IMG/M |
| JGI12368J12877_100359 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | 1206 | Open in IMG/M |
| JGI12368J12877_101318 | Not Available | 696 | Open in IMG/M |
| JGI12368J12877_102473 | Not Available | 533 | Open in IMG/M |
| JGI12368J12877_102761 | Not Available | 510 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| JGI12368J12877_100237 | JGI12368J12877_1002372 | F031584 | SALGHVWTAPWQELSDASAALVGCGHVSGLLMRPM* |
| JGI12368J12877_100303 | JGI12368J12877_1003034 | F057789 | MSETALQFTGTDLRGLLDVLLEALKVIRRTGRRPTITVNGKLYASHDLRKVAALLPDEELQPHHQALVNVMFAKKQRGYRKTAYNLADRVNSWRTEEQKLAARQAAKTSALAVAEPAPFRNRGFSERTI |
| JGI12368J12877_100359 | JGI12368J12877_1003593 | F076466 | MLTEATQLEMADLKDRCRNFRGESTGHEQWPADILAEKFQPAEDVDVAPDGGEVETIARANIAVCGIAIVQS |
| JGI12368J12877_101318 | JGI12368J12877_1013181 | F091102 | TFFPRPGPAPRSSLESKADSDFNSVVNYTVRHLGENRMKQWKLLPLICGAWVVTWYPSWAIEKRFLEIPGPHDSIVTFDLDTVQIIQPGRFTVVSTEIDNPKVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCRRGLYGMMHDENDPTSALLIVVPEGSYLFD |
| JGI12368J12877_102473 | JGI12368J12877_1024732 | F005929 | MRENMSLLSFWGLVFSLIAVTLFVVIYSYQKSKYANRNIVGDLRQRSVDVYLAAKTPEAESDSKMFRAASNEIERLRAETRVLFWLIIAMNTAVIIIFILAYQNF* |
| JGI12368J12877_102761 | JGI12368J12877_1027611 | F012657 | TTLHLPEAVHADFREKVFLYREANVLLALVDRVNPSSDGRDSLFEPVFWEYERIIFRESSDHFGELSDHPILRAARRESVAAALQDLNFRMHPPRVNKWDFAVDWSRSWFAGIGHNELNPARLERFSEFWSREYTAVQQALDATVTTGR* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |