Sample 3300000675

Overview

Basic Information
IMG/M Taxon OID	3300000675 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0075432 \| Gp0054836 \| Ga0001977
Sample Name	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	5118095
Sequencing Scaffolds	9
Novel Protein Genes	9
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → tropical forest → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Luquillo Experimental Forest Soil, Puerto Rico
Coordinates	Lat. (^o)	18.0	Long. (^o)	-65.0	Alt. (m)	N/A	Depth (m)	.1
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F012657	Metagenome	278	Y
F015573	Metagenome	253	Y
F045461	Metagenome	152	N
F054391	Metagenome	140	Y
F062933	Metagenome / Metatranscriptome	130	Y
F091102	Metagenome	107	N
F091204	Metagenome	107	N
F097844	Metagenome / Metatranscriptome	104	N
F104209	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F012657

Metagenome

278

F015573

Metagenome

253

F045461

Metagenome

152

F054391

Metagenome

140

F062933

Metagenome / Metatranscriptome

130

F091102

Metagenome

107

F091204

Metagenome

107

F097844

Metagenome / Metatranscriptome

104

F104209

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
JGI12335J11872_100103	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1411	Open in IMG/M
JGI12335J11872_100114	All Organisms → cellular organisms → Bacteria	1374	Open in IMG/M
JGI12335J11872_100318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	923	Open in IMG/M
JGI12335J11872_100444	Not Available	802	Open in IMG/M
JGI12335J11872_100490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	771	Open in IMG/M
JGI12335J11872_100731	Not Available	652	Open in IMG/M
JGI12335J11872_100790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	635	Open in IMG/M
JGI12335J11872_100962	Not Available	586	Open in IMG/M
JGI12335J11872_101141	Not Available	550	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

JGI12335J11872_100103

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

1411

Open in IMG/M

JGI12335J11872_100114

All Organisms → cellular organisms → Bacteria

1374

Open in IMG/M

JGI12335J11872_100318

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

923

Open in IMG/M

JGI12335J11872_100444

Not Available

802

Open in IMG/M

JGI12335J11872_100490

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium

771

Open in IMG/M

JGI12335J11872_100731

Not Available

652

Open in IMG/M

JGI12335J11872_100790

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales

635

Open in IMG/M

JGI12335J11872_100962

Not Available

586

Open in IMG/M

JGI12335J11872_101141

Not Available

550

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
JGI12335J11872_100103	JGI12335J11872_1001032	F015573	VAETESPPQDELHNPAVYLERIAREIKIIREMMSKVVNYMVDAESEIPEKMRRFIMYMHDVHDVLNMYQEIGQEPPQHVKREAERCDDRYRQILYEMHTDGGAFEKVRRNMASDPENRWDHTRFLPKRKESDNEAGKSNEGRSGS*
JGI12335J11872_100114	JGI12335J11872_1001141	F104209	GTHAHSTLSAETTHVQVFYRFHPLYSSTLQILRRPKRGDGAVCVSDPMGRRLKIPMWMLLPNSAEMKIAEQAYLSKEALLSLVLLVSTPREIENRVHANLLQAVVDTCKGGQRATTTTPGAGDRKSGGHGADRRRDTNRTDRSHGPHSGGGLSNGRRKSR*
JGI12335J11872_100318	JGI12335J11872_1003181	F097844	RSQTMINPLDLLNKFISAIIAYGPKNKTKKARMARKAARRKRFAAMKRH*
JGI12335J11872_100444	JGI12335J11872_1004442	F012657	MIAMPSFKKKRRLRTSPVMLAASLHQMAERDDPQVAPETFRLPEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG*
JGI12335J11872_100490	JGI12335J11872_1004902	F091102	SIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCRRGXYGMMHDENDPTSALLIVVPEGSYLFDYYVAVCRALTHEEPYLPQKH*
JGI12335J11872_100731	JGI12335J11872_1007311	F091204	MSATVIEFPGARESGSKPVHDVQSAQVSNEVVAPLTDFEIAAIENLGXIFQAGGTEAFNFAAKRQLFILASLIKRILGEDGLSELLTAAEWV*
JGI12335J11872_100790	JGI12335J11872_1007902	F054391	AGGSLSDIETTIAMTAKDAAATFESAGKAAKAFRSAGHP*
JGI12335J11872_100962	JGI12335J11872_1009622	F062933	RLELIPMRHIAARHVFALLVALIVGVTVFYRLPEPLPELTRAEFMAEVRAGHVRRIEIEDQEVIIAESSTRGEFRTGFDRKVDVNLPAELRALGVEVYFSKSPLGLI*
JGI12335J11872_101141	JGI12335J11872_1011411	F045461	MLFGAVFVIMLAAAIIVDLAALLQLSGLISGLPLNILEIGGILTALTIFPLLVMGMSISVDLNHRK*

Scaffold ID

Protein ID

Family

Sequence

JGI12335J11872_100103

JGI12335J11872_1001032

F015573

VAETESPPQDELHNPAVYLERIAREIKIIREMMSKVVNYMVDAESEIPEKMRRFIMYMHDVHDVLNMYQEIGQEPPQHVKREAERCDDRYRQILYEMHTDGGAFEKVRRNMASDPENRWDHTRFLPKRKESDNEAGKSNEGRSGS*

JGI12335J11872_100114

JGI12335J11872_1001141

F104209

GTHAHSTLSAETTHVQVFYRFHPLYSSTLQILRRPKRGDGAVCVSDPMGRRLKIPMWMLLPNSAEMKIAEQAYLSKEALLSLVLLVSTPREIENRVHANLLQAVVDTCKGGQRATTTTPGAGDRKSGGHGADRRRDTNRTDRSHGPHSGGGLSNGRRKSR*

JGI12335J11872_100318

JGI12335J11872_1003181

F097844

RSQTMINPLDLLNKFISAIIAYGPKNKTKKARMARKAARRKRFAAMKRH*

JGI12335J11872_100444

JGI12335J11872_1004442

F012657

MIAMPSFKKKRRLRTSPVMLAASLHQMAERDDPQVAPETFRLPEAFHDRFREKILLYREANILLVLMDRVNPSRDGRDPLFEPVFWEYERIVFWELPRIFGESFNPDRAARRQSVAVALRDLNVRMHPPIGNRYDFALSWSRNWFAGIGHNEINPATLARFSSFWSSEYTAVQKVLDAAVKTSRRLIDFTFIKRRILNLWSGG*

JGI12335J11872_100490

JGI12335J11872_1004902

F091102

SIVTFDLDTVQIIQPGRFTVVSTEIDNPEVMQFRLNVLEHLRTHCAHAEGKYPAPPELFTLGRPDIAVGDIEVAHVSGSKFVRWFYPYRLLSPTLENYEILFCDGESNYFEMRTLIANGSRHKDVYDCRRGXYGMMHDENDPTSALLIVVPEGSYLFDYYVAVCRALTHEEPYLPQKH*

JGI12335J11872_100731

JGI12335J11872_1007311

F091204

MSATVIEFPGARESGSKPVHDVQSAQVSNEVVAPLTDFEIAAIENLGXIFQAGGTEAFNFAAKRQLFILASLIKRILGEDGLSELLTAAEWV*

JGI12335J11872_100790

JGI12335J11872_1007902

F054391

AGGSLSDIETTIAMTAKDAAATFESAGKAAKAFRSAGHP*

JGI12335J11872_100962

JGI12335J11872_1009622

F062933

RLELIPMRHIAARHVFALLVALIVGVTVFYRLPEPLPELTRAEFMAEVRAGHVRRIEIEDQEVIIAESSTRGEFRTGFDRKVDVNLPAELRALGVEVYFSKSPLGLI*

JGI12335J11872_101141

JGI12335J11872_1011411

F045461

MLFGAVFVIMLAAAIIVDLAALLQLSGLISGLPLNILEIGGILTALTIFPLLVMGMSISVDLNHRK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000675: Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences