| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300000252 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046785 | Gp0053646 | Ga0026517 |
| Sample Name | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P16 1000m |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 42773739 |
| Sequencing Scaffolds | 15 |
| Novel Protein Genes | 17 |
| Associated Families | 16 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Not Available | 11 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus → Algoriphagus machipongonensis | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine aphotic zone → sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | P16, Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 49.283333 | Long. (o) | -134.666667 | Alt. (m) | N/A | Depth (m) | 1000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002425 | Metagenome / Metatranscriptome | 560 | Y |
| F006364 | Metagenome / Metatranscriptome | 375 | Y |
| F012070 | Metagenome | 284 | Y |
| F013190 | Metagenome / Metatranscriptome | 273 | Y |
| F022907 | Metagenome / Metatranscriptome | 212 | Y |
| F025055 | Metagenome | 203 | Y |
| F026708 | Metagenome / Metatranscriptome | 197 | Y |
| F027203 | Metagenome | 195 | Y |
| F029786 | Metagenome / Metatranscriptome | 187 | Y |
| F057445 | Metagenome / Metatranscriptome | 136 | N |
| F063198 | Metagenome / Metatranscriptome | 130 | N |
| F066858 | Metagenome / Metatranscriptome | 126 | N |
| F068126 | Metagenome | 125 | Y |
| F083802 | Metagenome / Metatranscriptome | 112 | N |
| F092225 | Metagenome | 107 | N |
| F095628 | Metagenome | 105 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| LPjun08P161000mDRAFT_1000042 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus | 9479 | Open in IMG/M |
| LPjun08P161000mDRAFT_1000261 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 5123 | Open in IMG/M |
| LPjun08P161000mDRAFT_1004643 | Not Available | 1228 | Open in IMG/M |
| LPjun08P161000mDRAFT_1006033 | All Organisms → cellular organisms → Archaea | 1042 | Open in IMG/M |
| LPjun08P161000mDRAFT_1007371 | Not Available | 917 | Open in IMG/M |
| LPjun08P161000mDRAFT_1008340 | Not Available | 849 | Open in IMG/M |
| LPjun08P161000mDRAFT_1008384 | Not Available | 846 | Open in IMG/M |
| LPjun08P161000mDRAFT_1012276 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus → Algoriphagus machipongonensis | 672 | Open in IMG/M |
| LPjun08P161000mDRAFT_1013005 | Not Available | 649 | Open in IMG/M |
| LPjun08P161000mDRAFT_1014084 | Not Available | 619 | Open in IMG/M |
| LPjun08P161000mDRAFT_1015293 | Not Available | 591 | Open in IMG/M |
| LPjun08P161000mDRAFT_1017882 | Not Available | 538 | Open in IMG/M |
| LPjun08P161000mDRAFT_1018030 | Not Available | 536 | Open in IMG/M |
| LPjun08P161000mDRAFT_1019217 | Not Available | 517 | Open in IMG/M |
| LPjun08P161000mDRAFT_1020078 | Not Available | 504 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| LPjun08P161000mDRAFT_1000042 | LPjun08P161000mDRAFT_100004215 | F095628 | MVYMYSIHLTFCIRNARAALVMKYGNGPFYDLQASSYAYKMRI* |
| LPjun08P161000mDRAFT_1000261 | LPjun08P161000mDRAFT_10002618 | F057445 | LQKLGKAAVNEILPKAVSLILIKERLENKRKKDFLDLSDLFSVAPDVIKLM* |
| LPjun08P161000mDRAFT_1002346 | LPjun08P161000mDRAFT_10023464 | F066858 | STVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANXLLLTAXVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG* |
| LPjun08P161000mDRAFT_1004643 | LPjun08P161000mDRAFT_10046433 | F063198 | LYIVRMRLEENSLISEDRLILNAPSKIRINRVKVVNTGATEARSSGDVYPNPLGPIRNPSIIRNNTSGILVRRNNASDKKPKIAIKLNASNAVLTFKILGEH* |
| LPjun08P161000mDRAFT_1006033 | LPjun08P161000mDRAFT_10060331 | F027203 | GSLLNDFVTTAPAPAWYRRSKTSSDIPKMPEARIVGLSSVSVPIEVESVGFTLNIFSPFSYNS* |
| LPjun08P161000mDRAFT_1007371 | LPjun08P161000mDRAFT_10073712 | F025055 | MSYFRNSAGDKKIAKATYSDSQMIEVLGGTVKKIFNYEGEDNVTFLKNEVFWLNYLKSKWVPELLEVGKNYVITSYYGPDLTKVHHLSRPKDLANQTLEMYRFFKDKNVFKLNGALRNMTLNKGQLVAFDFKHARFRTNKYIDYEIFSYEKWLSKIDNELVEKLKLLI* |
| LPjun08P161000mDRAFT_1007542 | LPjun08P161000mDRAFT_10075421 | F066858 | STVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG* |
| LPjun08P161000mDRAFT_1008340 | LPjun08P161000mDRAFT_10083402 | F026708 | FFFSNNKTNGVTARKPTKNRTELKVNGPILSIPVSWAMNVVPQIKVQATKQTNDIVFFIS |
| LPjun08P161000mDRAFT_1008384 | LPjun08P161000mDRAFT_10083842 | F006364 | MELELDNDTRKMRIINYLDYMDDKSLQEIAAALYNLSKRRQEISNKKELVNATGK* |
| LPjun08P161000mDRAFT_1012276 | LPjun08P161000mDRAFT_10122761 | F083802 | MKETITIAKTDVQTEKIGYSKWLKHKESRFNALFPKRLEKVYSTIRSLSKLSNRNNYFYDPSNIFMALSSIVLELRELAASYGLDSSDIKIDIYSLSDQQKKPTLKTDDIRNNDAKDIASELLEIIEKKIKTEEKLHSEINTLKRELSFLRDKVENQQWSSTRNFT* |
| LPjun08P161000mDRAFT_1013005 | LPjun08P161000mDRAFT_10130051 | F092225 | SLSLLVLLNACGMTAPAFLATSTGAYSEYKVMSIIKTGTDFTLSLAKLPTTNDMVLSRITGYECKVSRALKQGIEYICRDVTIHPPENGKVNIDNKKEK* |
| LPjun08P161000mDRAFT_1014084 | LPjun08P161000mDRAFT_10140841 | F068126 | MGMAISLILTSCAKHNKDDKKHNDLGSGDKSNLPVTLTSLIE |
| LPjun08P161000mDRAFT_1015293 | LPjun08P161000mDRAFT_10152931 | F012070 | NEDDYILYEILCDYCDXEYVIKYKMKDEKPKQAIECCPFCSNLIEEPAESIIHDEETGWD |
| LPjun08P161000mDRAFT_1017882 | LPjun08P161000mDRAFT_10178822 | F013190 | TWEGSIPLNEIPSTVASKVASSTKVVIAEITAFHSLDVLVLAENFNLIK* |
| LPjun08P161000mDRAFT_1018030 | LPjun08P161000mDRAFT_10180301 | F002425 | MTDEEIKAFMEYFKNELPNPEHHPLKAXWXMKWXKSIVLRNRENEDTARLSN* |
| LPjun08P161000mDRAFT_1019217 | LPjun08P161000mDRAFT_10192172 | F022907 | MDEDNTLDIRQSVGDVGGDFTKSITIETGGEERVGDIEAVIDLTYNIFQYIPELIFVSIYGLAMYAGVLLLHKHIKGNG*TX* |
| LPjun08P161000mDRAFT_1020078 | LPjun08P161000mDRAFT_10200781 | F029786 | RGIKPEIGKDEEPWVSVGIEVKDEDFLKIAQEAHARDITFNKMINIILKTGIKDAEYKFEHDSRPQLLNEIGEPFKS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |