NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000185

3300000185: Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011



Overview

Basic Information
IMG/M Taxon OID3300000185 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0047444 | Gp0053789 | Ga0010866
Sample NameWastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011
Sequencing StatusPermanent Draft
Sequencing CenterMcGill University
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size14461339
Sequencing Scaffolds8
Novel Protein Genes9
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin2161
Not Available2
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → unclassified Thermotogaceae → Thermotogaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHydrocarbon Resource Environments Microbial Communities From Canada And Usa
TypeEngineered
TaxonomyEngineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationSyncrude, Ft. McMurray, Alberta
CoordinatesLat. (o)57.02Long. (o)-111.55Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025775Metagenome200Y
F031787Metagenome181Y
F058179Metagenome / Metatranscriptome135Y
F064744Metagenome / Metatranscriptome128Y
F075043Metagenome / Metatranscriptome119Y
F077343Metagenome / Metatranscriptome117Y
F092306Metagenome / Metatranscriptome107Y
F096626Metagenome / Metatranscriptome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Draft_c100124All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Thiobacillaceae → Thiobacillus → Thiobacillus denitrificans7717Open in IMG/M
Draft_c100725All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium2798Open in IMG/M
Draft_c103476All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium1223Open in IMG/M
Draft_c104538All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin2161050Open in IMG/M
Draft_c106791Not Available800Open in IMG/M
Draft_c108993All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Thermotogaceae → unclassified Thermotogaceae → Thermotogaceae bacterium595Open in IMG/M
Draft_c109252Not Available567Open in IMG/M
Draft_c109580All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium530Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Draft_c100124Draft_1001249F025775MKQLLTFQGFPMVVVVGMIVWSWISVLSVLIASFF*
Draft_c100725Draft_1007253F092306MTMPATFYEGPGWQQSSEPILIVDVQEADIWPVDNRSGSGTKDQIDEGLHPIVAIGSQTAAGGRPLNLTGVVISCNISVHGTATDRVMVNIADGAIVRQYVANVLTYNMGAAATFEQAPVVGQPVYVDDSDDLSEGVTCSLSPLNDAGVRNPLAGYLWYCQDEIADGQVGGSRATSTFDTSLLNSLVEQEYCVLLVNAARELA*
Draft_c100725Draft_1007254F075043MRKLLYAMQEIRKAQLAEQNAPTERLREVEDKFHYLDQGLNGIGKSAHPDERLAETMTSGDFTYAIQEFVQRKMYSSYQRQSFAFEPLVKTDTLPNYLPVTRYLDQAGVDDLEYVGEKAQARPGYMDDLTKRQWQVYRWEKQYDFSHEALVNDDLGYFDELTGKMGESARRTLEKFVSRFYTNATTIARLVGLGALYSTTGRLTTARISEARMAFNQRTDARGERIQSPLTHIVYHTGLADTVAQIQASMLVPELATNAANVIKGTFTAIEDPYIVGTAPNLPWYAFASGIKTFVLARRSGMAGPMILRKKSDIETATSLLGGGGAVDNIWGDFQSG
Draft_c103476Draft_1034761F075043MRKILYAMQEIRKAQLAEQNVPTERLREVEDKFHYLDQGLNGIGKSAHPDERLAETMTSGDFTYAIQEFVQRKMYSSYQRQSFAFEPLVKTDTLPNYLPVTRYLDQAGVDDLEYVGEKAQARPGFMDDLTKRQWQVYRWEKQYDFSHEALVNDDLGYFDEITGKMGEAARRTLEKFVSRMYTNATTIARLVGLGALYSTTGRLTTARISEARMAFNQRTDSRGERIQSPLTHIVYHTGLADTVAQIQASMLVPELATNAANVIKGTFTAIEDPYIVGTAPNLPWYAFASGIKTFVLARRSGMAGPMILRKKSDIETATSLLGGGGAVDNIWGDFQS
Draft_c104538Draft_1045382F077343MRYEEFTVENLTVGSIFNKYGNLITPGCNPSGGLDYFVDGNKSVNGTDGLSWGRAYNTLATAIAASDISIAATRNRWWARRNRIFVVGDALSENLVKFPTKCDVIGLGSYDGFTRAGLSGRHLPVGESYGTRFFNIHFKALAHASPIITLTNAAAGPQFRGCMFDGTLGTMTSAILSTACPFLVVDDCDFMGTFVTSYITFGAGEAGGTQITRNRMLGTAAKGIVAPGTTTASWMPLIQDNVIRATGMPIDEDAGVFYVVNNRLITDINIGTTTDGFDFSLALSCGNIMTGLNGVATTVPFA
Draft_c106791Draft_1067911F096626AMPDTSEVPAQFRPLVDSALLDACEAVLNTFVTSKTTAGNANIPATLFTLESLLTATASRRMTSAMLLGMWRNSSKYVLDVAPKLTSMAGSALLRYQANIERHEKRIAALAGRSPELSLSAADLDKLMVNLADDDADTPFGTYLADRTEEVRSKLVEDSDAL*
Draft_c108993Draft_1089932F031787MNASEREQMSARRVIHPATYRVRHDNGDTFEVRGLTLARVRKLIEAECQKRNWNIMDVDWWEVEK*
Draft_c109252Draft_1092521F058179MTAENIALALWLTFIAACIMAFYLLADAATLSMTGSCTGQGFTNITIEADILMASINQTVNGTTWQIWGAP
Draft_c109580Draft_1095802F064744LLLARLLAIEADMAVLRERVEELEDELHETWMGGTD*
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